Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01142 ATGGCGGAACCTGCGGAAGACATCGATGGAACCACCAGCAAAGAAGAGCAAGAAGAGGCTTTGGTCGCTCTCATCGATCATCGTTGCCATGAAGTTCAAAATCTCAAGCACCGTGTCTCCTACTACACTTCACAGCTTGAGGAAGCGCAGAAGAGATTGCAGGATACAGAATCTAAATTGGCCCGGCTTCGTCGTCAGAGCAATGCAGTGTCATCCAAAGATTCTTTCAGAAGTAGAGCTGTGAGTGTGAAAGTGGAGCAAACGGTAAATGAAGGTAGCAGGCCCCAGCCAGTGTCGAAACCCGAGCTTGTGATTCCGGCTGTGGTTCCAAAGACTTCTCAGAACAGTGCATTGGCTGGAAATGGAGCGAAGGCTTCAAATAGCTCTAGGGCTCAATCAAGTCCTTCTCATATTAAGAATGTAGTTAAAGTTGAAGGGGACAAAAATATTGGCAACTCTTCTCTTCGAGAAACTTCGAACACTCCTGATAGAGGAACAAAACGGAAGCTTGAACAGCAGTTCAAGGAGCATAAAGAGTTGATTCCATTAATACGTAGCAGCTCATCACCTTCTCAAATTCGCTGCGTTGGGAGCAATCACATCTCCAGTCAGCATAAAAGAAAGTTGAGAAGTCTCATCTCATGCCCTGTGAACGAGCAGTTATTTGTGACCAGTGCCCTGGATGGAGTAGTCAACTTGTGGCAGTTACAGGCCAGAGGGTCAAGTGCCTCTCTTCTTAGTTCCGCGGACTGTGTATCTCCAAAACAAAGAAGATGGCCAGAAGATATGGCCTGGCATCCAGAGGGGAATCGTGTATTTCTTGTTTACAGTGCTGATGGTGGGGACTCTCAGGTCTCAATCATGAATCTGAACAAAAGTGAAGGGAAAGCTCGTGTTACTTTCCTTGAGGATAAACCTCATGTTAAGGGCATTATCAACAGCATAATTTTCTTGCCTTGGGATAGCACGTCTTTTATCACTGGTGGAAGTGATCATGCTGTCATACAATGGAAAGAGGGAGATGGAGAGAAAATATGGAAGCCAAAGGCATTGCACAGAAGCCTGCACTCGTCAGCAGTCATGGGAGTTGCAGGGATGCAGCAGAAGCCAATTGTACTTTCTGCAGGGGCGGACAAGAGAATACTTGGGTTTGACGTAAATGTTGGAAGAACTGAGTTCAGGCATCAGATAGAAAGCAAATGCATGAGTATATTACCTAATCCATGCGATTTTAACCTATTTATGGTCCAAACAGGCACTCCAGGAAAGCAACTTCGATTATATGATATCAGACTTAGGCAGACAGAACTACATGCCTTCGGGTGGGAGCAAAAGAGCAGTGAATCTCAGTCAGCATTGATAAATCAAGCTTGGTCTCCTGACGGTTTGATTCTTACATCTGGCTCTGCGGACCCTGTGATCCATCTATTTGATATCCGGTACAATTTGCACAAGCCTTCCCAATCCATAAGTGCTCATCACAAACGAGTTTTCAAGGCTGTATGGCTCGAATCACTCCCTCTTCTTATTTCCATATCTTCTGATCTCAACATTGGATTGCACAAAACAGCGTGA 1575 45.33 MAEPAEDIDGTTSKEEQEEALVALIDHRCHEVQNLKHRVSYYTSQLEEAQKRLQDTESKLARLRRQSNAVSSKDSFRSRAVSVKVEQTVNEGSRPQPVSKPELVIPAVVPKTSQNSALAGNGAKASNSSRAQSSPSHIKNVVKVEGDKNIGNSSLRETSNTPDRGTKRKLEQQFKEHKELIPLIRSSSSPSQIRCVGSNHISSQHKRKLRSLISCPVNEQLFVTSALDGVVNLWQLQARGSSASLLSSADCVSPKQRRWPEDMAWHPEGNRVFLVYSADGGDSQVSIMNLNKSEGKARVTFLEDKPHVKGIINSIIFLPWDSTSFITGGSDHAVIQWKEGDGEKIWKPKALHRSLHSSAVMGVAGMQQKPIVLSAGADKRILGFDVNVGRTEFRHQIESKCMSILPNPCDFNLFMVQTGTPGKQLRLYDIRLRQTELHAFGWEQKSSESQSALINQAWSPDGLILTSGSADPVIHLFDIRYNLHKPSQSISAHHKRVFKAVWLESLPLLISISSDLNIGLHKTA* 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16356464 16361301 - Chy12G217420.1 Chy12g01142 238923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01142 524 Gene3D - 26 407 IPR015943 GO:0005515
Chy12g01142 524 MobiDBLite consensus disorder prediction 115 167 - -
Chy12g01142 524 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 8 523 - -
Chy12g01142 524 SMART WD40_4 440 478 IPR001680 GO:0005515
Chy12g01142 524 SMART WD40_4 192 235 IPR001680 GO:0005515
Chy12g01142 524 SMART WD40_4 483 522 IPR001680 GO:0005515
Chy12g01142 524 SMART WD40_4 295 338 IPR001680 GO:0005515
Chy12g01142 524 SMART WD40_4 347 385 IPR001680 GO:0005515
Chy12g01142 524 MobiDBLite consensus disorder prediction 115 139 - -
Chy12g01142 524 Coils Coil 32 73 - -
Chy12g01142 524 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 8 523 - -
Chy12g01142 524 SUPERFAMILY WD40 repeat-like 201 520 IPR036322 GO:0005515
Chy12g01142 524 Gene3D - 408 524 IPR015943 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02707 Chy12g01142 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01142 Chy-Chr12:16356464 Chy02g02707 Chy-Chr2:29896897 8.52E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01142 - - csv:101207060 996.882