Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy12g01144 | ATGCTTTCCAGAGTTGGGAACGTTCTTTGGATGGAAAATCGGGACGATGAAGACTCATCTTCCTGGACTAAAAACAACACTGACCACAACCATCTCAACCACCCTGTTAATTGCTCTGTTTTGAACAACAAAGACGAAATCACCTCCCTCTCTACCTTCAAATCCATGCTTGAGGTTGAAGATGACTGGTGTATCTCTGCTAATGCTCTCCATAACCATAACCACCACACCGACATCAATGACATTACCTTCTCTCAAAATTTCACCGACCCACCTGATAATTTGTTGCTCCCCCCTGGAGATTCCTCCTCTTCTTGTTCCCCTTCTTCTTCTGTGTTTAATAACATTGACCCATCTCAATTGCGTTTCTTCTTACCTCCAACTCGCACTTTGTCTTCACTTCATAAGGTAGTTTCTAACAACCCTTTAGACCATGGCTTCGATTTGGGAGCAGAGGTTGGGTTTCTTGACGTCCAAGCTTCAAATGCTTCGACTCTGCTCAACGATGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCATCTAGTCAGATGAACACTCCTAATTTGTGCTTAAGTTCTCAATTGACAGCACAAAACGTGGCCCCAATGAGTGATAATTGTTCGGGATTAGCTGGATTTCAGAGTTTTGATGAGAATTTGGGAAATGCTCTGCTTTTGAATCGGTCTAAGCTTTTGAGACCACTTGAATCTTTTCCCTCAGTGGGAGCTCAGCCGACTCTTTTCCAGAAGAGAGCTGCTCTAAGGAAGAGTTTAGCTGATAAGGGAAGCAGTTTGGGGGTTTTGAGCCCCGATGGTGGCTGGTTTTCAAATAGGATTGAAGGGGGGATTGGGAAAAATGAAATGGGTGATGAAAATGGGAAGAAGAGGAAAATGGTTTATGCAGATGAATTGCAAGATACTAGCATCGATACATCCCGTTTCAATTACGATTCTGATGACTTTACCGAAAATACTAACACTAAATTGGATGAGAGTGGTAGAAATGTTGGAAATACATCTAACGCCAATAGTACAGTAACCGGCGGCGACCAGAAGGGGAAGAAAAAGGGACTTCCAGCGAAGAATTTAATGGCCGAGAGACGCCGGAGGAAGAAGCTCAATGATAGGCTGTACATGCTGAGGTCCGTTGTTCCAAAAATCAGCAAAATGGATAGAGCTTCAATTCTTGGAGATGCAATTGAGTACTTGAAGGAATTACTGCAAAGAATCAACGACCTCCATAATGAATTGGAGTTTTCTCCTTCTGGGGCAGCCTTGACGCCAGGTGCAAGCTTCCATCCCTTGACTCCAACACCACCAAGCCTCTCGAGTCGTATAAAGGAGGAGCTTTGTCCTACCTCATTTCCCAGCCCAAACGGCCAACCTGCAAGGGTCGAAGTTCGAGTACGAGAAGGACGGGCAGTAAATATACACATGTTTTGTGGTCGCCGACCAGGTCTCTTGCTCTCTACAGTTAGGGCATTAGATAACCTTGGATTGGACATCCAACAGGCTGTGATTAGCTGCTTTAATGGTTTTGCTATGGACATTTTTCGAGCAGAGCAATGCAGCGAAGGTCAAGATGTCCATCCTGAGCAAATAAAAGCAATATTATTGGATTCAGTTGGCTTCAATAGTGCCACATAA | 1653 | 44.28 | MLSRVGNVLWMENRDDEDSSSWTKNNTDHNHLNHPVNCSVLNNKDEITSLSTFKSMLEVEDDWCISANALHNHNHHTDINDITFSQNFTDPPDNLLLPPGDSSSSCSPSSSVFNNIDPSQLRFFLPPTRTLSSLHKVVSNNPLDHGFDLGAEVGFLDVQASNASTLLNDGGGLLTGFTDLSPSSQMNTPNLCLSSQLTAQNVAPMSDNCSGLAGFQSFDENLGNALLLNRSKLLRPLESFPSVGAQPTLFQKRAALRKSLADKGSSLGVLSPDGGWFSNRIEGGIGKNEMGDENGKKRKMVYADELQDTSIDTSRFNYDSDDFTENTNTKLDESGRNVGNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFSPSGAALTPGASFHPLTPTPPSLSSRIKEELCPTSFPSPNGQPARVEVRVREGRAVNIHMFCGRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLDSVGFNSAT* | 551 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 16365054 | 16367882 | - | Chy12G217440.1 | Chy12g01144 | 238925 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy12g01144 | 550 | CDD | bHLH_AtAMS_like | 362 | 426 | - | - | |
Chy12g01144 | 550 | Gene3D | - | 353 | 422 | IPR036638 | GO:0046983 | |
Chy12g01144 | 550 | MobiDBLite | consensus disorder prediction | 327 | 359 | - | - | |
Chy12g01144 | 550 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 101 | 548 | - | - | |
Chy12g01144 | 550 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 362 | 424 | IPR036638 | GO:0046983 | |
Chy12g01144 | 550 | CDD | ACT_UUR-ACR-like | 479 | 539 | - | - | |
Chy12g01144 | 550 | MobiDBLite | consensus disorder prediction | 327 | 352 | - | - | |
Chy12g01144 | 550 | PANTHER | BHLH TRANSCRIPTIONAL FACTOR | 101 | 548 | - | - | |
Chy12g01144 | 550 | Coils | Coil | 398 | 418 | - | - | |
Chy12g01144 | 550 | Pfam | Helix-loop-helix DNA-binding domain | 366 | 408 | IPR011598 | GO:0046983 | |
Chy12g01144 | 550 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 359 | 408 | IPR011598 | GO:0046983 | |
Chy12g01144 | 550 | SMART | finulus | 365 | 414 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g00781 | Chy-Chr2:4839171 | Chy12g01144 | Chy-Chr12:16365054 | 3.07E-39 | dispersed | |
Chy02g02257 | Chy-Chr2:26656731 | Chy12g01144 | Chy-Chr12:16365054 | 4.69E-17 | dispersed | |
Chy04g00184 | Chy-Chr4:1633605 | Chy12g01144 | Chy-Chr12:16365054 | 2.57E-38 | dispersed | |
Chy06g01460 | Chy-Chr6:15811168 | Chy12g01144 | Chy-Chr12:16365054 | 1.58E-62 | dispersed | |
Chy10g00903 | Chy-Chr10:14732787 | Chy12g01144 | Chy-Chr12:16365054 | 3.07E-26 | dispersed | |
Chy11g00848 | Chy-Chr11:11964100 | Chy12g01144 | Chy-Chr12:16365054 | 9.16E-14 | dispersed | |
Chy12g01144 | Chy-Chr12:16365054 | Chy03g01286 | Chy-Chr3:15895293 | 1.43E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18877 | PF00010 | HLH | 2.10E-09 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy12g01144 | - | - | csv:101206422 | 1009.21 |