Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01144 ATGCTTTCCAGAGTTGGGAACGTTCTTTGGATGGAAAATCGGGACGATGAAGACTCATCTTCCTGGACTAAAAACAACACTGACCACAACCATCTCAACCACCCTGTTAATTGCTCTGTTTTGAACAACAAAGACGAAATCACCTCCCTCTCTACCTTCAAATCCATGCTTGAGGTTGAAGATGACTGGTGTATCTCTGCTAATGCTCTCCATAACCATAACCACCACACCGACATCAATGACATTACCTTCTCTCAAAATTTCACCGACCCACCTGATAATTTGTTGCTCCCCCCTGGAGATTCCTCCTCTTCTTGTTCCCCTTCTTCTTCTGTGTTTAATAACATTGACCCATCTCAATTGCGTTTCTTCTTACCTCCAACTCGCACTTTGTCTTCACTTCATAAGGTAGTTTCTAACAACCCTTTAGACCATGGCTTCGATTTGGGAGCAGAGGTTGGGTTTCTTGACGTCCAAGCTTCAAATGCTTCGACTCTGCTCAACGATGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCATCTAGTCAGATGAACACTCCTAATTTGTGCTTAAGTTCTCAATTGACAGCACAAAACGTGGCCCCAATGAGTGATAATTGTTCGGGATTAGCTGGATTTCAGAGTTTTGATGAGAATTTGGGAAATGCTCTGCTTTTGAATCGGTCTAAGCTTTTGAGACCACTTGAATCTTTTCCCTCAGTGGGAGCTCAGCCGACTCTTTTCCAGAAGAGAGCTGCTCTAAGGAAGAGTTTAGCTGATAAGGGAAGCAGTTTGGGGGTTTTGAGCCCCGATGGTGGCTGGTTTTCAAATAGGATTGAAGGGGGGATTGGGAAAAATGAAATGGGTGATGAAAATGGGAAGAAGAGGAAAATGGTTTATGCAGATGAATTGCAAGATACTAGCATCGATACATCCCGTTTCAATTACGATTCTGATGACTTTACCGAAAATACTAACACTAAATTGGATGAGAGTGGTAGAAATGTTGGAAATACATCTAACGCCAATAGTACAGTAACCGGCGGCGACCAGAAGGGGAAGAAAAAGGGACTTCCAGCGAAGAATTTAATGGCCGAGAGACGCCGGAGGAAGAAGCTCAATGATAGGCTGTACATGCTGAGGTCCGTTGTTCCAAAAATCAGCAAAATGGATAGAGCTTCAATTCTTGGAGATGCAATTGAGTACTTGAAGGAATTACTGCAAAGAATCAACGACCTCCATAATGAATTGGAGTTTTCTCCTTCTGGGGCAGCCTTGACGCCAGGTGCAAGCTTCCATCCCTTGACTCCAACACCACCAAGCCTCTCGAGTCGTATAAAGGAGGAGCTTTGTCCTACCTCATTTCCCAGCCCAAACGGCCAACCTGCAAGGGTCGAAGTTCGAGTACGAGAAGGACGGGCAGTAAATATACACATGTTTTGTGGTCGCCGACCAGGTCTCTTGCTCTCTACAGTTAGGGCATTAGATAACCTTGGATTGGACATCCAACAGGCTGTGATTAGCTGCTTTAATGGTTTTGCTATGGACATTTTTCGAGCAGAGCAATGCAGCGAAGGTCAAGATGTCCATCCTGAGCAAATAAAAGCAATATTATTGGATTCAGTTGGCTTCAATAGTGCCACATAA 1653 44.28 MLSRVGNVLWMENRDDEDSSSWTKNNTDHNHLNHPVNCSVLNNKDEITSLSTFKSMLEVEDDWCISANALHNHNHHTDINDITFSQNFTDPPDNLLLPPGDSSSSCSPSSSVFNNIDPSQLRFFLPPTRTLSSLHKVVSNNPLDHGFDLGAEVGFLDVQASNASTLLNDGGGLLTGFTDLSPSSQMNTPNLCLSSQLTAQNVAPMSDNCSGLAGFQSFDENLGNALLLNRSKLLRPLESFPSVGAQPTLFQKRAALRKSLADKGSSLGVLSPDGGWFSNRIEGGIGKNEMGDENGKKRKMVYADELQDTSIDTSRFNYDSDDFTENTNTKLDESGRNVGNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFSPSGAALTPGASFHPLTPTPPSLSSRIKEELCPTSFPSPNGQPARVEVRVREGRAVNIHMFCGRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLDSVGFNSAT* 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16365054 16367882 - Chy12G217440.1 Chy12g01144 238925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01144 550 CDD bHLH_AtAMS_like 362 426 - -
Chy12g01144 550 Gene3D - 353 422 IPR036638 GO:0046983
Chy12g01144 550 MobiDBLite consensus disorder prediction 327 359 - -
Chy12g01144 550 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 101 548 - -
Chy12g01144 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 424 IPR036638 GO:0046983
Chy12g01144 550 CDD ACT_UUR-ACR-like 479 539 - -
Chy12g01144 550 MobiDBLite consensus disorder prediction 327 352 - -
Chy12g01144 550 PANTHER BHLH TRANSCRIPTIONAL FACTOR 101 548 - -
Chy12g01144 550 Coils Coil 398 418 - -
Chy12g01144 550 Pfam Helix-loop-helix DNA-binding domain 366 408 IPR011598 GO:0046983
Chy12g01144 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 408 IPR011598 GO:0046983
Chy12g01144 550 SMART finulus 365 414 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00781 Chy-Chr2:4839171 Chy12g01144 Chy-Chr12:16365054 3.07E-39 dispersed
Chy02g02257 Chy-Chr2:26656731 Chy12g01144 Chy-Chr12:16365054 4.69E-17 dispersed
Chy04g00184 Chy-Chr4:1633605 Chy12g01144 Chy-Chr12:16365054 2.57E-38 dispersed
Chy06g01460 Chy-Chr6:15811168 Chy12g01144 Chy-Chr12:16365054 1.58E-62 dispersed
Chy10g00903 Chy-Chr10:14732787 Chy12g01144 Chy-Chr12:16365054 3.07E-26 dispersed
Chy11g00848 Chy-Chr11:11964100 Chy12g01144 Chy-Chr12:16365054 9.16E-14 dispersed
Chy12g01144 Chy-Chr12:16365054 Chy03g01286 Chy-Chr3:15895293 1.43E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18877 PF00010 HLH 2.10E-09 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01144 - - csv:101206422 1009.21