Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01147 ATGGGTTGCGTTCTTGGCACACCAGCCGCCGACGCTCGCCTCGGCGCATCAGGACATCCCCGTCGCCGCCGCACCACCGATCACCTCTCTCATACCCACGCTGTTAACAAACACACAACTTCATTACAAAATCAGGGAGTTCGGCAGGACTTGGATTCCTTCTCTGTAGAGCGTCGGAGGCCTTCGCCGGGCCTTTGCCACAGGAATGAGCAAGGTTGGCCGTCTTGGCTACTGGCCGTCGCCGGCGAGGTTATCCAAGGATGGACGCCTCGTCGAGCTAATACGTTTGAGAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTACAAGGCGAGGGATCTTATTACGGGGAAAATTGTAGCTCTGAAGAAGGTTAGGTTTGATAATTTAGAACCGGAGAGTGTAAGGTTTATGGCCAGAGAGATTTTGGTTCTGAAACGCCTCGATCATCCCAATGTGCTTAAGCTTGAAGGCTTGGTTACTTCGAGAATGTCGTGTAGTCTTTACTTAGTGTTTGAGTATATGGAGCACGACCTCGCCGGACTTGCTGCCCGTCAAGGAGTAAAGTTCACGGAGCCTCAGGTCAAGTGCTATATGAAGCAACTATTGTCGGGGCTTGAGCATTGTCACAACCGAGGTGTCTTGCATCGTGATATAAAGGGTTCCAATTTGCTAATTGATAACGAAGGAATACTGAAAATAGCTGATTTTGGGTTAGCTACTTTCTTTGATCCTGAACAGAACCAACATATGACTAGTCGAGTAGTAACCCTTTGGTACCGTCCTCCTGAATTATTACTTGGAGCGACTCTTTATGGTACAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTCTCTGGGAGGCCGATCATGCCAGGAAGGACAGAGGTTGAACAACTCCATAAGATTTTTAAATTATGTGGTTCTCCATCTGAGGATTACTGGAAGAAGTACAAATTGCCAAATGCAACTCTATTTAAACCCCAACAACCATACAAACGCTGCATCGCAGAAACTTTCAAAGATTTTCCATCTTCTTCTCTACCACTTATCGAATCTCTCCTTACAATGGACCCTGATGGAAGAGGTACTGCCACTGCTGCTCTGAATAGCGAATTCTTTACTACCGAGCCTCTTGCTTGTGAACCATCTAGTCTACCTAAATACCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGCAAAGGGGTCTAAATGGGAAATCAACAGCTGTTGACGGTGGTGGAAGGAGAGTAAGAGGACGGGATCGGGTTGGTCGTGCTGTCCCAGCTCCTGAAGCTAATGCAGAGATACAAGCAAACTTAGATAGGTGGAGAAATGCGACAAATGCAAATGGTAAGAGCAAGAGCGAGAAGTTTCCTCCACCTCATCAAGATGGGGCCGTGGGATACCCGCCACACGAGACGTCCCAGAGGGGCCATCTATCATTTGGGGCAGCTGATACTTCATTCAGCTCCTCCATTTTTAGTTCAAAGTCAGGATCTGTTAAAAGTTCAGTAGCTCCCGGGGGACCTTCTCGGAGGAAGAAAGGAGATAAAGATAACTCCTCGATGTCTTCATCTCGAAAATTCATCCGTGCATTGAAGCCATCAATCGGGCCAACATTTATGAGAATATGTAAGAAGAAATCAACAGAAGGATTTCAATCAGTTCCATATGTGGTGGCACTCTTTAGTGCAATGTTGTGGTTATATTACGCTTCCTTCAATTCTAATGAAACCCTTCTCATTACTATCAATTCTGTTGGCTGTCTCATTGAGACTCTTTACATTGCCATCTTCATTGTTTTTGCTCCTAAACAAATTCGGGTTTCAACGTTGAGATTTGTTCTTCTACTGAACTTTGGAGGGTTTTGCATAATTCTACTTGTTACTCACTTCTTCGTTCATGGCTCTAATCAAGTGAAGGTTGTTGGATGGATTTGTGTTGCCTTTTCCGTCTCTGTCTTTGCCGCTCCGCTTACGATCATGAGATTGGTGATTCGCACAAAGAGCGTGGAGTTCATGCCCTTTTCATTATCGTTTTTCCTCACACTTAGCGCAATTACATGGCTTCTTTACGGCGTATTTCTCAAAGACATCTATGTTGCGCTTCCAAATGTATTGGGATTTATATTTGGAGTAGCACAGATGATCCTATATTTGATTTACAGAAAGTATGAGATAGCCATAGCAAAGGAAATGAAGCTACCAGAACAAACAACAGTGGAAATTGTAATGAAACAAAAACAAGATTCTTCTGTTGAAGCAATTGAGTATGTTGAGAAAGGGCTACGTTTGGCGAAATACAAACGCCAACGCGTAACGTACCGACATGAGACCAACGTCGTGAAAAAGGTAACGCTGACGTGCGTCAGTCGCATTGGCATAGAATGGAAGATTGCAAGAATTTTGTTGTACTGGTGTCCTCTTGGGGTTGCTCAACCTACTACTTCTATTCTTCTCTCCTTTCCAAACTAA 2514 44.99 MGCVLGTPAADARLGASGHPRRRRTTDHLSHTHAVNKHTTSLQNQGVRQDLDSFSVERRRPSPGLCHRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAARQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPEQNQHMTSRVVTLWYRPPELLLGATLYGTGVDLWSAGCILAELLSGRPIMPGRTEVEQLHKIFKLCGSPSEDYWKKYKLPNATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLTMDPDGRGTATAALNSEFFTTEPLACEPSSLPKYPPSKELDVKLRDEEARRQRGLNGKSTAVDGGGRRVRGRDRVGRAVPAPEANAEIQANLDRWRNATNANGKSKSEKFPPPHQDGAVGYPPHETSQRGHLSFGAADTSFSSSIFSSKSGSVKSSVAPGGPSRRKKGDKDNSSMSSSRKFIRALKPSIGPTFMRICKKKSTEGFQSVPYVVALFSAMLWLYYASFNSNETLLITINSVGCLIETLYIAIFIVFAPKQIRVSTLRFVLLLNFGGFCIILLVTHFFVHGSNQVKVVGWICVAFSVSVFAAPLTIMRLVIRTKSVEFMPFSLSFFLTLSAITWLLYGVFLKDIYVALPNVLGFIFGVAQMILYLIYRKYEIAIAKEMKLPEQTTVEIVMKQKQDSSVEAIEYVEKGLRLAKYKRQRVTYRHETNVVKKVTLTCVSRIGIEWKIARILLYWCPLGVAQPTTSILLSFPN* 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16403329 16424786 + Chy12G217470.1 Chy12g01147 238928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01147 837 ProSiteProfiles Protein kinase domain profile. 96 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01147 837 PANTHER CELL DIVISION PROTEIN KINASE 55 535 - -
Chy12g01147 837 SUPERFAMILY Protein kinase-like (PK-like) 89 385 IPR011009 -
Chy12g01147 837 SMART serkin_6 96 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01147 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Chy12g01147 837 Gene3D - 543 617 - -
Chy12g01147 837 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Chy12g01147 837 MobiDBLite consensus disorder prediction 506 539 - -
Chy12g01147 837 MobiDBLite consensus disorder prediction 409 493 - -
Chy12g01147 837 Pfam Sugar efflux transporter for intercellular exchange 552 619 IPR004316 GO:0016021
Chy12g01147 837 Pfam Sugar efflux transporter for intercellular exchange 655 737 IPR004316 GO:0016021
Chy12g01147 837 CDD STKc_CDK9_like 96 380 - -
Chy12g01147 837 Gene3D - 650 745 - -
Chy12g01147 837 MobiDBLite consensus disorder prediction 453 467 - -
Chy12g01147 837 MobiDBLite consensus disorder prediction 16 34 - -
Chy12g01147 837 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 55 535 - -
Chy12g01147 837 Gene3D Transferase(Phosphotransferase) domain 1 179 419 - -
Chy12g01147 837 Gene3D Phosphorylase Kinase; domain 1 83 178 - -
Chy12g01147 837 MobiDBLite consensus disorder prediction 1 44 - -
Chy12g01147 837 Pfam Protein kinase domain 96 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01127 Chy-Chr2:7980635 Chy12g01147 Chy-Chr12:16403329 0 dispersed
Chy06g00655 Chy-Chr6:4494701 Chy12g01147 Chy-Chr12:16403329 0 dispersed
Chy11g01134 Chy-Chr11:17034333 Chy12g01147 Chy-Chr12:16403329 0 dispersed
Chy12g01147 Chy-Chr12:16403329 Chy12g01523 Chy-Chr12:18995713 2.85E-169 dispersed
Chy12g01147 Chy-Chr12:16403329 Chy12g01148 Chy-Chr12:16425314 3.33E-120 tandem
Chy02g01006 Chy-Chr2:6771512 Chy12g01147 Chy-Chr12:16403329 6.44E-142 transposed
Chy03g00280 Chy-Chr3:2978617 Chy12g01147 Chy-Chr12:16403329 2.24E-150 transposed
Chy04g01449 Chy-Chr4:21132250 Chy12g01147 Chy-Chr12:16403329 1.38E-116 transposed
Chy05g00037 Chy-Chr5:253177 Chy12g01147 Chy-Chr12:16403329 1.06E-118 transposed
Chy06g01157 Chy-Chr6:10239150 Chy12g01147 Chy-Chr12:16403329 0 transposed
Chy09g00032 Chy-Chr9:301478 Chy12g01147 Chy-Chr12:16403329 0 transposed
Chy10g00271 Chy-Chr10:6694529 Chy12g01147 Chy-Chr12:16403329 0 transposed
Chy11g01817 Chy-Chr11:24525755 Chy12g01147 Chy-Chr12:16403329 4.16E-75 wgd
Chy12g01147 Chy-Chr12:16403329 Chy02g02684 Chy-Chr2:29768317 1.42E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71634 PF00069 Pkinase 1.80E-67 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01147 K08819 - csv:101205716 1040.8