Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01154 ATGGTGAGGGGCCGACGGAGTAGTCCACGTAGAAGCGTGGACTTGGTAAATGGGAAGAAGGTAAATGGGGTTCATGTTGAGCCTCCGGTTTTCTCCGGCGAAAAGAAAGGGTCGTTGTTGGTGGAAGAAAGCGGCGCCATGGAGGGAGAAAAGCCTCTCCATGATTGTCTTCTTGGGAGGTTTGTAGAAGATAAGTTTGTTTATGGACAAACCTTTATTATTAGGTCTTATGAAATTGGACCTGATAAAACTGCCACCATGGAAACTCTCATGAATCTTCTTCAGGAAACGGCGCTGAATCATGTAACGTGCTCGGGTTTGGCCGGAAATGACTTTGGCGCCACTCGGGAGATGAGCCTCCGGAAACTCATCTGGGTTGTTACACGTGTTCACGTTCAAGTTCAGAGATATAGTTGCTGGGGAGATGTTGTTGAGATAGACACCTGGGTTGACGCAGCTGGCAAAAATGGGATGCGACGTGATTGGATTATAAGAGACTATCATACTCGAGAGGTTATTACTCGAGCTACTAGCACATGGGTTATAATGAACAAAGAAACAAGAAGGTTATCAAAAATACCAGACCAAGTTAGAGAAGAGTTGACCCCATTTTATCTCAATAGAATCGCCATCCCCACTGATCAAAACGACAGCGAAAAGATCGACAAGCTCACTGATAAAACCGCTGAGAGAATTCGATCAGGCTTAGCACCTAGATGGAACGACATGGATGCCAACCAGCATGTCAACAATGTTAAATACATAGGGTGGATTTTGGAGAGTGTACCAATAAGTGTGTTGGAAGATTTTGATCTAACGAGCATGACGCTGGAATATCGAAGAGAATGCCGGCAATCCAATCTGGTGGAGTCATTGACAACGACCACCACCACAGCCACCGGAGACCGTTCCAAAAATCTCCATTACACCCACCTTCTTCGGATGCAACCCAATAAGGATGAGATTGTGAGAGCCAGAACTCAATGGAATTCCAAGCCCAAACAATATTTTACTAATTAA 1020 45.1 MVRGRRSSPRRSVDLVNGKKVNGVHVEPPVFSGEKKGSLLVEESGAMEGEKPLHDCLLGRFVEDKFVYGQTFIIRSYEIGPDKTATMETLMNLLQETALNHVTCSGLAGNDFGATREMSLRKLIWVVTRVHVQVQRYSCWGDVVEIDTWVDAAGKNGMRRDWIIRDYHTREVITRATSTWVIMNKETRRLSKIPDQVREELTPFYLNRIAIPTDQNDSEKIDKLTDKTAERIRSGLAPRWNDMDANQHVNNVKYIGWILESVPISVLEDFDLTSMTLEYRRECRQSNLVESLTTTTTTATGDRSKNLHYTHLLRMQPNKDEIVRARTQWNSKPKQYFTN* 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16468776 16470694 + Chy12G217540.1 Chy12g01154 238935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01154 339 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 7 333 IPR045023 GO:0006633|GO:0016297
Chy12g01154 339 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 233 329 IPR029069 -
Chy12g01154 339 Gene3D Hotdog Thioesterase 59 336 - -
Chy12g01154 339 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 62 211 IPR029069 -
Chy12g01154 339 CDD 4HBT 71 184 - -
Chy12g01154 339 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 7 333 - -
Chy12g01154 339 Pfam Acyl-ACP thioesterase 67 330 IPR002864 GO:0006633|GO:0016790
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01154 K10781 FATB; fatty acyl-ACP thioesterase B [EC:3.1.2.14 3.1.2.21] - csv:101218502 669.463
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01935 Chy-Chr2:22679481 Chy12g01154 Chy-Chr12:16468776 1.12E-106 dispersed
Chy09g00878 Chy-Chr9:11527250 Chy12g01154 Chy-Chr12:16468776 2.15E-90 dispersed
Chy12g01154 Chy-Chr12:16468776 Chy05g01349 Chy-Chr5:17620792 4.84E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g82 . . . . . . . . . . . . . . . Cpe20g00297 . . . . . . . . . . . . . . . . . . . . . Chy12g01154 Cme12g01576 . . Bda11g01589 . . . . . Sed08g2423 . . . . . . . . Bhi08g01516 Tan05g2990 Cmetu12g0820 Lac10g0598 Hepe07g2122 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012249 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01154 Chy_Chr12 FPKM 1.265829 1.320406 25.300303 25.284092 130.700256 124.372353 132.362732 8.055182 8.289504 8.322425