Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01170 ATGGCGACGACGACGACTAATGTTGGCGGCGGCGGTGGTGGGGGTGGTGGGGAGGATAGAGTTATGGCTACGGCTCAGCAGATATTGAATAGCCTTAATACTCCTAAGGATGTTCGAGACGATATGCTTTTGATCTTCTCTAGTTTTGATAATCGTCTTTCTAATATCACCAGTTTGGTCAACAGTGGGGATTCGAAGAAAGAGGAGGATCGATTCGAAGCTGCTGAGAAGGTGATTCTTCGTTGGGATTCTGGTCATGGAGCTTCTCGGAACTCAATTAATTGGGAAGACTCGCCTGATGAGGCGGCTGAGTACTTAACTGCGGTTGATGATATTATTCAGTGGATCGACGACTTGTCGATTCGTTCGGATTCTGCTGAGATCGTCGACCGTGCTGAGAACGCGATCCAGATCGCTATGTCGAGGCTTGAGGATGAGTTTCGTCATATGTTGATTCGGAGCACCGTTCCTCTCGATGCTGACCATCTCTACGGTTCAATTCGTAAGGTTTCCCTCTCTTTTGCTTCGCACGACAGCGAAAACTCCGATGAATTTGAGTCGTTTGCTGATACTCACCGTGGTTCCGGTATCTATCATGAGCGTGGTGTCAGTTTGGGAGATGATTTGCGGGTTGATTTGATCCATCCTGACGCCGTTGTTGATTTGAAGGAGATCGCGGATCGGATGATTCGTTCTGGATACGAGAAAGAGTGTGTTAATGTGTATACTGGTGTTCGTCGGGATGCTTTAGATGAGTGCTTGGTGGTTCTTGGAGTTGAAAAGCTCAGTATTGAGGATGTTCAGAAAATTGACTGGAAAGTCTTAGACGAGAAGATGAAGAAATGGATCCAAGCTGTTAAAGTTAGTGTTCGAGTACTCTTGACGGGGGAGAAGCGACTGTGTGACTATATCTTTAATGGGTCTGATGATTCTGAAGAAGTTTGCTTCAATGAGACTGCAAAAGGGTGCATAAGACAATTATTGAATTTTGCTGAAGCCATTGCTATAGGGGAAAGGTCAGTGGAGAAGCTATTTCGTATTCTAGATATGTATGAAGCTCTGGAATATGTTTTCCCAGAATTGCAGGCTATGGTCACTGATGAATTTGTGATCGAGGAGGCGCGAGGAGTACTTTCTAGGCTGGGAGAGGCCGCCAAAGGTACATTTGTTGAATTTGAGAATGCTGTTCGGAGTGAAACTTCCAAGAAAACAATGTTAAATGCTGAGATTCACCCGCTTACTCGATATGTCATGAATTACTTAACATTGGTTGTGGTTTATAGTAAGACTCTTGATGCACTCTTAGAAGGTGATGATGAGGATTTGCATCATCTCGGGGTTGATGGTGCTGACAATTTGGAGTTAGAAACTATGTCGCCTTTAGGTCGTCGTTTGTTTTCATTGATAGCAAACCTGGAGACCAATCTAGAGAGAAAATCCAAACTCTATGGTGATGATTCAATACAATATATATTCCTCATGAACAATATACAATATATTGTGCAAAAAGTGAAAGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGCTGGGTACGTAAGCGCCGAGGCCAGGTTCGCATATATGCAACAAACTATCTTAGGGCGTCTTGGGGCAAATTATTATCCTTTTTGAAGGAAGAAGGAACTGGTGGGAGCTCCAATAGTGCCCTGAAACTAGCTACTTTAAAGGAAAAATTCAAAAATTTCAATGCTGGCTTTGAGGAAATATATAGAGTTCAGACAGGTTGGAAGGTTCCAGATGCTCAACTACGAGAAGAGCTCCGAATTTCAGTGTCCGCAAAAGCTCTACCTGCCTATCGTGCCTTCTTGGGAAGACATGGAAGTCAGTTAGAGAATGCAAGACATGCTGGGAGGTATATAAAGTACACATCAGATGACTTGGAAGGCTATCTATTGGATTTGTTTGAAGGATCATCTTGTGTTATACATCACTTACGAAGAAAAAGTAGTTCATAG 1977 43.55 MATTTTNVGGGGGGGGGEDRVMATAQQILNSLNTPKDVRDDMLLIFSSFDNRLSNITSLVNSGDSKKEEDRFEAAEKVILRWDSGHGASRNSINWEDSPDEAAEYLTAVDDIIQWIDDLSIRSDSAEIVDRAENAIQIAMSRLEDEFRHMLIRSTVPLDADHLYGSIRKVSLSFASHDSENSDEFESFADTHRGSGIYHERGVSLGDDLRVDLIHPDAVVDLKEIADRMIRSGYEKECVNVYTGVRRDALDECLVVLGVEKLSIEDVQKIDWKVLDEKMKKWIQAVKVSVRVLLTGEKRLCDYIFNGSDDSEEVCFNETAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYEALEYVFPELQAMVTDEFVIEEARGVLSRLGEAAKGTFVEFENAVRSETSKKTMLNAEIHPLTRYVMNYLTLVVVYSKTLDALLEGDDEDLHHLGVDGADNLELETMSPLGRRLFSLIANLETNLERKSKLYGDDSIQYIFLMNNIQYIVQKVKDSELGKLLGDRWVRKRRGQVRIYATNYLRASWGKLLSFLKEEGTGGSSNSALKLATLKEKFKNFNAGFEEIYRVQTGWKVPDAQLREELRISVSAKALPAYRAFLGRHGSQLENARHAGRYIKYTSDDLEGYLLDLFEGSSCVIHHLRRKSSS* 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16583153 16585129 + Chy12G217700.1 Chy12g01170 238951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01170 658 Pfam Exo70 exocyst complex subunit 280 639 IPR046364 GO:0000145|GO:0005546|GO:0006887
Chy12g01170 658 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 53 656 - -
Chy12g01170 658 PANTHER EXOCYST COMPLEX PROTEIN EXO70 53 656 IPR004140 GO:0000145|GO:0006887
Chy12g01170 658 MobiDBLite consensus disorder prediction 1 20 - -
Chy12g01170 658 Gene3D Exocyst complex component Exo70 86 648 - -
Chy12g01170 658 SUPERFAMILY Cullin repeat-like 72 643 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01759 Chy-Chr2:18785089 Chy12g01170 Chy-Chr12:16583153 0 dispersed
Chy04g00756 Chy-Chr4:9618640 Chy12g01170 Chy-Chr12:16583153 6.01E-155 dispersed
Chy08g00789 Chy-Chr8:15529608 Chy12g01170 Chy-Chr12:16583153 1.73E-63 dispersed
Chy10g01231 Chy-Chr10:16950412 Chy12g01170 Chy-Chr12:16583153 1.74E-113 dispersed
Chy12g00323 Chy-Chr12:3489766 Chy12g01170 Chy-Chr12:16583153 3.64E-127 dispersed
Chy12g01170 Chy-Chr12:16583153 Chy12g01498 Chy-Chr12:18822797 1.71E-126 dispersed
Chy12g01170 Chy-Chr12:16583153 Chy11g01268 Chy-Chr11:18902583 2.21E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01170 K07195 - csv:101212753 1253.43