Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01170 ATGGCGACGACGACGACTAATGTTGGCGGCGGCGGTGGTGGGGGTGGTGGGGAGGATAGAGTTATGGCTACGGCTCAGCAGATATTGAATAGCCTTAATACTCCTAAGGATGTTCGAGACGATATGCTTTTGATCTTCTCTAGTTTTGATAATCGTCTTTCTAATATCACCAGTTTGGTCAACAGTGGGGATTCGAAGAAAGAGGAGGATCGATTCGAAGCTGCTGAGAAGGTGATTCTTCGTTGGGATTCTGGTCATGGAGCTTCTCGGAACTCAATTAATTGGGAAGACTCGCCTGATGAGGCGGCTGAGTACTTAACTGCGGTTGATGATATTATTCAGTGGATCGACGACTTGTCGATTCGTTCGGATTCTGCTGAGATCGTCGACCGTGCTGAGAACGCGATCCAGATCGCTATGTCGAGGCTTGAGGATGAGTTTCGTCATATGTTGATTCGGAGCACCGTTCCTCTCGATGCTGACCATCTCTACGGTTCAATTCGTAAGGTTTCCCTCTCTTTTGCTTCGCACGACAGCGAAAACTCCGATGAATTTGAGTCGTTTGCTGATACTCACCGTGGTTCCGGTATCTATCATGAGCGTGGTGTCAGTTTGGGAGATGATTTGCGGGTTGATTTGATCCATCCTGACGCCGTTGTTGATTTGAAGGAGATCGCGGATCGGATGATTCGTTCTGGATACGAGAAAGAGTGTGTTAATGTGTATACTGGTGTTCGTCGGGATGCTTTAGATGAGTGCTTGGTGGTTCTTGGAGTTGAAAAGCTCAGTATTGAGGATGTTCAGAAAATTGACTGGAAAGTCTTAGACGAGAAGATGAAGAAATGGATCCAAGCTGTTAAAGTTAGTGTTCGAGTACTCTTGACGGGGGAGAAGCGACTGTGTGACTATATCTTTAATGGGTCTGATGATTCTGAAGAAGTTTGCTTCAATGAGACTGCAAAAGGGTGCATAAGACAATTATTGAATTTTGCTGAAGCCATTGCTATAGGGGAAAGGTCAGTGGAGAAGCTATTTCGTATTCTAGATATGTATGAAGCTCTGGAATATGTTTTCCCAGAATTGCAGGCTATGGTCACTGATGAATTTGTGATCGAGGAGGCGCGAGGAGTACTTTCTAGGCTGGGAGAGGCCGCCAAAGGTACATTTGTTGAATTTGAGAATGCTGTTCGGAGTGAAACTTCCAAGAAAACAATGTTAAATGCTGAGATTCACCCGCTTACTCGATATGTCATGAATTACTTAACATTGGTTGTGGTTTATAGTAAGACTCTTGATGCACTCTTAGAAGGTGATGATGAGGATTTGCATCATCTCGGGGTTGATGGTGCTGACAATTTGGAGTTAGAAACTATGTCGCCTTTAGGTCGTCGTTTGTTTTCATTGATAGCAAACCTGGAGACCAATCTAGAGAGAAAATCCAAACTCTATGGTGATGATTCAATACAATATATATTCCTCATGAACAATATACAATATATTGTGCAAAAAGTGAAAGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGCTGGGTACGTAAGCGCCGAGGCCAGGTTCGCATATATGCAACAAACTATCTTAGGGCGTCTTGGGGCAAATTATTATCCTTTTTGAAGGAAGAAGGAACTGGTGGGAGCTCCAATAGTGCCCTGAAACTAGCTACTTTAAAGGAAAAATTCAAAAATTTCAATGCTGGCTTTGAGGAAATATATAGAGTTCAGACAGGTTGGAAGGTTCCAGATGCTCAACTACGAGAAGAGCTCCGAATTTCAGTGTCCGCAAAAGCTCTACCTGCCTATCGTGCCTTCTTGGGAAGACATGGAAGTCAGTTAGAGAATGCAAGACATGCTGGGAGGTATATAAAGTACACATCAGATGACTTGGAAGGCTATCTATTGGATTTGTTTGAAGGATCATCTTGTGTTATACATCACTTACGAAGAAAAAGTAGTTCATAG 1977 43.55 MATTTTNVGGGGGGGGGEDRVMATAQQILNSLNTPKDVRDDMLLIFSSFDNRLSNITSLVNSGDSKKEEDRFEAAEKVILRWDSGHGASRNSINWEDSPDEAAEYLTAVDDIIQWIDDLSIRSDSAEIVDRAENAIQIAMSRLEDEFRHMLIRSTVPLDADHLYGSIRKVSLSFASHDSENSDEFESFADTHRGSGIYHERGVSLGDDLRVDLIHPDAVVDLKEIADRMIRSGYEKECVNVYTGVRRDALDECLVVLGVEKLSIEDVQKIDWKVLDEKMKKWIQAVKVSVRVLLTGEKRLCDYIFNGSDDSEEVCFNETAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYEALEYVFPELQAMVTDEFVIEEARGVLSRLGEAAKGTFVEFENAVRSETSKKTMLNAEIHPLTRYVMNYLTLVVVYSKTLDALLEGDDEDLHHLGVDGADNLELETMSPLGRRLFSLIANLETNLERKSKLYGDDSIQYIFLMNNIQYIVQKVKDSELGKLLGDRWVRKRRGQVRIYATNYLRASWGKLLSFLKEEGTGGSSNSALKLATLKEKFKNFNAGFEEIYRVQTGWKVPDAQLREELRISVSAKALPAYRAFLGRHGSQLENARHAGRYIKYTSDDLEGYLLDLFEGSSCVIHHLRRKSSS* 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16583153 16585129 + Chy12G217700.1 Chy12g01170 238951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01170 658 Pfam Exo70 exocyst complex subunit 280 639 IPR046364 GO:0000145|GO:0005546|GO:0006887
Chy12g01170 658 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 53 656 - -
Chy12g01170 658 PANTHER EXOCYST COMPLEX PROTEIN EXO70 53 656 IPR004140 GO:0000145|GO:0006887
Chy12g01170 658 MobiDBLite consensus disorder prediction 1 20 - -
Chy12g01170 658 Gene3D Exocyst complex component Exo70 86 648 - -
Chy12g01170 658 SUPERFAMILY Cullin repeat-like 72 643 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01170 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101212753 1253.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01759 Chy-Chr2:18785089 Chy12g01170 Chy-Chr12:16583153 0 dispersed
Chy04g00756 Chy-Chr4:9618640 Chy12g01170 Chy-Chr12:16583153 6.01E-155 dispersed
Chy08g00789 Chy-Chr8:15529608 Chy12g01170 Chy-Chr12:16583153 1.73E-63 dispersed
Chy10g01231 Chy-Chr10:16950412 Chy12g01170 Chy-Chr12:16583153 1.74E-113 dispersed
Chy12g00323 Chy-Chr12:3489766 Chy12g01170 Chy-Chr12:16583153 3.64E-127 dispersed
Chy12g01170 Chy-Chr12:16583153 Chy12g01498 Chy-Chr12:18822797 1.71E-126 dispersed
Chy12g01170 Chy-Chr12:16583153 Chy11g01268 Chy-Chr11:18902583 2.21E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy10g01231 . 14 652 EXO70 exocyst subunit family AT5G03540 76.7 1.0e-285 979.2
Chy08g00976 . 1 640 EXO70 exocyst subunit family AT5G03540 70.9 2.3e-264 908.3
Chy08g00976 . 1 640 EXO70 exocyst subunit family AT5G52340 80.0 1.9e-297 1018.1
Chy10g01231 . 16 652 EXO70 exocyst subunit family AT5G52340 74.4 1.1e-271 932.6
Chy08g00976 . 145 632 EXO70 exocyst subunit family AT5G52350 63.2 1.2e-173 606.7
Chy10g01231 . 151 652 EXO70 exocyst subunit family AT5G52350 60.6 5.4e-169 591.3
Chy12g00323 . 1 630 EXO70 exocyst subunit family AT5G58430 66.3 4.9e-245 844.0
Chy12g00323 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 8.8e-175 610.5
Chy07g01488 . 60 673 EXO70 exocyst subunit family AT5G13150 53.0 1.1e-173 607.1
Chy04g00756 . 12 611 EXO70 exocyst subunit family AT1G72470 64.5 2.7e-214 741.9
Chy04g00756 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 3.7e-208 721.5
Chy04g00756 . 9 608 EXO70 exocyst subunit family AT3G14090 64.1 1.0e-218 756.5
Chy12g01170 . 18 656 EXO70 exocyst subunit family AT5G50380 62.0 1.7e-227 785.8
Chy02g01759 . 13 651 EXO70 exocyst subunit family AT5G50380 61.8 8.1e-225 776.9
Chy03g01199 . 13 683 EXO70 exocyst subunit family AT4G31540 73.1 5.9e-292 1000.0
Chy10g00590 . 58 601 EXO70 exocyst subunit family AT3G55150 51.1 9.4e-151 530.8
Chy11g01268 . 30 595 EXO70 exocyst subunit family AT3G55150 50.3 3.4e-148 522.3
Chy10g00590 . 27 601 EXO70 exocyst subunit family AT2G39380 51.5 2.2e-155 546.2
Chy04g02117 . 27 633 EXO70 exocyst subunit family AT3G09520 54.6 4.4e-177 618.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01170 Chy_Chr12 FPKM 5.736347 7.163093 3.103743 3.131315 2.263616 2.96578 3.014154 1.849845 1.766962 1.812568