Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01174 ATGGCGGTCTCATTGAGCGATGTCAAGTCGGCAGCTGGTCTCAAAAAGCTCGACGAGTACCTGCTCAGTCGTAGTTACATTTCTGGGTATCAAGCTTCGAAAGACGATATCGCTGTTTACGAAGCTCTCTCCAAGCCCGTTTCCAGCGAATATGTTAACGTATCTAGATGGTATAATCATATCGCAGCACTCGTGAGAGCCTCTGCTTGTTTTGGAGAGGGTTCTGGCGTTAAGTTCGACTCAGAAGCAATCGCCACCCCACCGGCTGCCGATGCTAAGGCTAGTGCTGATGACGACGACGACGATATGGATCTGTTTGGTGAAGAGACTGAAGAGGAGAAGAAGGCTGCTGAGGAGCGTGCAGCTGCCGTCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGAAAATCATCAGTTTTGATGGATATCAAGCCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGCGTTCAGATGGAGGGATTGCTTTGGGGAGCATCCAAGCTCGTCCCTGTTGGATATGGTATTAAGAAACTACAGATAATGCTCACAATTGTTGACGACCTTGTGTCAGTCGACAATCTCATTGAGGAACACTTGACAGTTGAACCCATTAACGAGCATGTTCAGAGTTGTGATATTGTTGCCTTCAACAAAATCTAG 675 46.96 MAVSLSDVKSAAGLKKLDEYLLSRSYISGYQASKDDIAVYEALSKPVSSEYVNVSRWYNHIAALVRASACFGEGSGVKFDSEAIATPPAADAKASADDDDDDMDLFGEETEEEKKAAEERAAAVKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLTVEPINEHVQSCDIVAFNKI* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16613446 16614921 + Chy12G217740.1 Chy12g01174 238955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01174 224 Gene3D - 2 72 - -
Chy12g01174 224 Gene3D - 128 224 IPR014717 -
Chy12g01174 224 PANTHER ELONGATION FACTOR 1-DELTA 1-RELATED 1 224 - -
Chy12g01174 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 213 224 IPR001326 GO:0003746|GO:0005853|GO:0006414
Chy12g01174 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 99 107 IPR001326 GO:0003746|GO:0005853|GO:0006414
Chy12g01174 224 SUPERFAMILY GST C-terminal domain-like 10 65 IPR036282 -
Chy12g01174 224 Pfam EF-1 guanine nucleotide exchange domain 137 224 IPR014038 GO:0003746|GO:0006414
Chy12g01174 224 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 224 - -
Chy12g01174 224 SMART EF1_GNE_2 135 224 IPR014038 GO:0003746|GO:0006414
Chy12g01174 224 CDD EF1B 133 224 IPR014038 GO:0003746|GO:0006414
Chy12g01174 224 SUPERFAMILY eEF-1beta-like 132 224 IPR036219 -
Chy12g01174 224 Coils Coil 107 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00237 Chy-Chr3:2245309 Chy12g01174 Chy-Chr12:16613446 6.69E-103 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01174 K03232 - csv:101215489 347.436