Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01177 ATGCAGACCTCCGTTGCCTCCATTAGTGGCAGTTTCTTTTTTTTTTTTGAGCATCAGAAAATGGGCAATGGCGGCGAAAGTATGGCGTTGGCTGTTTGCAGCGATAGAAACATGGGATTAGGGATTACTATTTGGGATGTGAAAACAGGCCAAACTCTCCTTCACATTCCGACTTGCGCTTCGCCTCCCTACGGCTTTATTTGCTTGAGAAACGAGTTCTTTGTTGCTTCTCAGACTCGTAAGGAAGGGTCCGTTGGTGGTGGATCCATTTTCATTTGGTCACTCAACAAGCCTCTGCCGCCTGTTACGAGCTATACATTAGAGACCATTGGACCACTCGCCTCAACAAAGGATGGTGTATATCTTGCAGGCGGAACTCGTTCAGGAAATATTTATCTTTGGGAGATTTGTAGTGGTGAACTGCTCAAGCTTTGGAGTGGTCATCATAAACCTGTAAAGTGTGTCCTATTTTCTTGGGACGATTCATTTCTCATTACTGGTTCATCGGACGGAATGATTTGTGTCTGGTCCATGATTAGTTTGTTGGATGTGGAACTTGTGGGAAACTCACAGCCAATAGTGTATTGTCTCATGGAACATAAGTCTTCTTTAACTGGTCTACTCACCATGTCTGGCTGCTCGATGTCGATAATCATTTCAAGCTCCCTCGATGGCAGTGTAAAGTTTTGGGACTTAATGTCAGGAATGATTAGGGGAACTCAAGCTCATACACAGGGGATCACCGCAATTGTTCTTCATCCAACTGAGCAAGTTCTGTTCTCTGGCACTGTTGACGGGCAAATTTTTGCTAGCAGGCTTGAATTTGGATTTGATAACTGCATTACCATTAGAGAAAATCAAATACTTGCACCAAAAGGACACAAAGGAGCTATTACTGCTCTGGCTTTTAGTCAGATGTATCTAATTTCTGCCGAGGATTGTACTGTTTGCATAAGGGACATCAGCAGTCAGAGGATCATACAAAAGCTTGACCATAAAAAAGGGAGAATAACCAATTTGGTAGCAATTCCACGGTCGTCCTTAATCTCTACGTCAAATCGTAAGAGAGTCTCTAATCAATCCTCCATGTCCTCACTCGACAAGTATCCTCAGCCTGCCAACTTGATGAAGAGCACAATTCCTCTCTTTTCATCCATCCAACCGCTTCGGGAGAATCTGAATTCCATCAGATTCACAAGTACCAGCTCATTGAATCAACAAATACTTGATATGAAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAGCTTAGAAAGGCGAATGTGGGCGTCCAGAATGACAAAGGAAGTGATGGACATGAATAACCATCTTCAATCAAGGTTACTAGACATGATGCGGATTCGATTGTTCGAGCCTGCAAAAATTAGCTCGTCCTCGAAGAAACAAAAAGATGAAAGAGATCGAGTTGCAAAGAAGAGGGAGAAGCGTCCATTATCATTCCATTAA 1479 43.0 MQTSVASISGSFFFFFEHQKMGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTRKEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTRSGNIYLWEICSGELLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEHKSSLTGLLTMSGCSMSIIISSSLDGSVKFWDLMSGMIRGTQAHTQGITAIVLHPTEQVLFSGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISAEDCTVCIRDISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKSTIPLFSSIQPLRENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTKEVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRPLSFH* 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16628998 16631844 + Chy12G217770.1 Chy12g01177 238958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01177 492 Gene3D - 4 187 IPR015943 GO:0005515
Chy12g01177 492 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 28 480 - -
Chy12g01177 492 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 178 IPR001680 GO:0005515
Chy12g01177 492 ProSitePatterns Trp-Asp (WD) repeats signature. 218 232 IPR019775 -
Chy12g01177 492 PANTHER WD-REPEAT PROTEIN 18 28 480 IPR045227 -
Chy12g01177 492 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 31 337 IPR011047 -
Chy12g01177 492 SMART WD40_4 138 177 IPR001680 GO:0005515
Chy12g01177 492 SMART WD40_4 234 272 IPR001680 GO:0005515
Chy12g01177 492 SMART WD40_4 190 231 IPR001680 GO:0005515
Chy12g01177 492 SMART WD40_4 282 320 IPR001680 GO:0005515
Chy12g01177 492 SMART WD40_4 100 135 IPR001680 GO:0005515
Chy12g01177 492 MobiDBLite consensus disorder prediction 464 492 - -
Chy12g01177 492 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 178 - -
Chy12g01177 492 Gene3D - 188 434 IPR015943 GO:0005515
Chy12g01177 492 Pfam WD domain, G-beta repeat 140 177 IPR001680 GO:0005515
Chy12g01177 492 ProSiteProfiles Trp-Asp (WD) repeats profile. 197 240 IPR001680 GO:0005515
Chy12g01177 492 MobiDBLite consensus disorder prediction 468 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01177 K14829 IPI3; pre-rRNA-processing protein IPI3 - csv:101212515 914.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00977 Chy-Chr7:14398977 Chy12g01177 Chy-Chr12:16628998 1.09E-25 dispersed
Chy12g01177 Chy-Chr12:16628998 Chy06g00436 Chy-Chr6:2936462 7.21E-11 dispersed
Chy12g01177 Chy-Chr12:16628998 Chy07g00141 Chy-Chr7:1201275 6.27E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00493 Csa01g00955 Chy12g01177 . . . . . . . . . Sed08g2444 . . . . . . Cpe09g00968 . Bhi08g01467 Tan05g2944 Cmetu07g1959 . . . . Cla03g00346 Cam03g0364 Cec03g0353 . . Cmu03g0970 Cre03g0662 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014470 0 3 0 0 0 1 1 0 0 1 1 0 1 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01177 Chy_Chr12 FPKM 19.221937 22.814194 20.619625 21.17996 16.237698 16.793556 16.096386 34.813198 31.527197 29.548353