Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01181 ATGGCGGCCAATTCGGCAGCATTGGCCTTGGAAGACGTGCCCTCCGTCGATCTTATGACGGAGCTTCTCCGCCGCATGAAGTGCTCCTCTAAGCCCGACAAGCGTCTCATTCTCATTGGTCCACCCGGATCAGGTAAGGGGACCCAATCACCAATCATCAAGGATGATTACTGCTTGTGCCACTTGGCTACTGGTGATATGTTAAGAGCGGCTGTTGCTGCTAAAACTCCTCTTGGTGTCAAGGCTAAAGAGGCTATGGACAAGGGTGAACTTGTTTCTGATGACTTGGTTGTTGGCATCATTGATGAAGCAATGAAAAAACCTTCATGTCAGAAAGGCTTCATTCTGGATGGATTTCCAAGAACTGTAGTTCAAGCGCAGAAGCTTGATGAAGTGCTTGAAAAGCAAGGAGTGAGAGTTGATAAGGTACTCAACTTTGCTATTGATGATGCAATTTTGGAGGAGAGAATCACTGGAAGATGGATTCACCCATCCAGTGGGAGAAGTTACCACACAAAATTTGCTCCTCCAAAGACTTCTGGTGTGGACGATATTACTGGAGAACCTTTGATTCAACGCAAAGATGATACTGTCGCTGTATTGAAGTCACGGCTGGAGGCATTTCACAAACAAACCGAGCCGGTGATTGATTATTATGCCAAAAAGGGTATTGTTGCTAATCTTCACGCGGAGAAGGCTCCAAAAGAAGTCACAGCTGAGGTTCAGAAAGTTCTCTCATCATAG 744 46.1 MAANSAALALEDVPSVDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDDYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEVLEKQGVRVDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTSGVDDITGEPLIQRKDDTVAVLKSRLEAFHKQTEPVIDYYAKKGIVANLHAEKAPKEVTAEVQKVLSS* 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16654440 16656835 + Chy12G217810.1 Chy12g01181 238962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01181 247 Hamap Adenylate kinase [adk]. 34 246 IPR000850 GO:0005524|GO:0006139|GO:0019205
Chy12g01181 247 PANTHER ADENYLATE KINASE 4-LIKE 10 247 - -
Chy12g01181 247 CDD ADK 35 237 IPR000850 GO:0005524|GO:0006139|GO:0019205
Chy12g01181 247 PANTHER NUCLEOTIDE KINASE 10 247 IPR000850 GO:0005524|GO:0006139|GO:0019205
Chy12g01181 247 Pfam Adenylate kinase, active site lid 160 195 IPR007862 GO:0004017
Chy12g01181 247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 245 IPR027417 -
Chy12g01181 247 ProSitePatterns Adenylate kinase signature. 114 125 IPR033690 -
Chy12g01181 247 Gene3D - 7 246 IPR027417 -
Chy12g01181 247 TIGRFAM adk: adenylate kinase 35 245 IPR006259 GO:0004017|GO:0005524|GO:0016776
Chy12g01181 247 Pfam Adenylate kinase 38 223 - -
Chy12g01181 247 PRINTS Adenylate kinase signature 65 79 IPR000850 GO:0005524|GO:0006139|GO:0019205
Chy12g01181 247 PRINTS Adenylate kinase signature 210 224 IPR000850 GO:0005524|GO:0006139|GO:0019205
Chy12g01181 247 PRINTS Adenylate kinase signature 193 208 IPR000850 GO:0005524|GO:0006139|GO:0019205
Chy12g01181 247 PRINTS Adenylate kinase signature 114 130 IPR000850 GO:0005524|GO:0006139|GO:0019205
Chy12g01181 247 PRINTS Adenylate kinase signature 37 50 IPR000850 GO:0005524|GO:0006139|GO:0019205
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01181 K00939 adk, AK; adenylate kinase [EC:2.7.4.3] - csv:101214286 483.026
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g02651 Chy12g01181 CCT
Chy02g02651 Chy12g01181 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00306 Chy-Chr6:2065522 Chy12g01181 Chy-Chr12:16654440 7.33E-18 dispersed
Chy08g00808 Chy-Chr8:15656150 Chy12g01181 Chy-Chr12:16654440 3.23E-32 dispersed
Chy10g00615 Chy-Chr10:12723570 Chy12g01181 Chy-Chr12:16654440 8.55E-27 dispersed
Chy11g01944 Chy-Chr11:25507357 Chy12g01181 Chy-Chr12:16654440 1.56E-21 dispersed
Chy12g01181 Chy-Chr12:16654440 Chy06g00863 Chy-Chr6:6220395 2.70E-17 dispersed
Chy05g01259 Chy-Chr5:16950809 Chy12g01181 Chy-Chr12:16654440 4.26E-37 transposed
Chy12g01181 Chy-Chr12:16654440 Chy02g02651 Chy-Chr2:29545929 1.62E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g143 . . Bda06g00737 . . . . Bma12g01075 . Cmo18g00202 . . Car10g00061 . . . . Bhi02g00537 . . . Hepe09g0061 . . . . . . . . . Cone2ag0964 Cone16ag0028 . Cone19ag0199 Lsi02g00488 Csa01g00950 Chy12g01181 Cme12g01602 . Blo15g00217 Bda11g01817 . Bpe07g00882 . . . . . . . . . Car18g00219 Cpe09g00971 . Bhi08g01461 . . . . . . Cla03g00344 Cam03g0360 . Cco03g0365 Clacu03g0361 Cmu03g0966 Cre03g0659 . Csa01g00069 Chy02g02651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003681 2 2 1 2 2 1 2 0 0 2 1 1 1 2 2 2 1 2 2 1 2 2 2 2 2 0 2 2 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01181 Chy_Chr12 FPKM 37.13084 33.008568 20.165432 21.852722 66.415886 48.363514 51.524654 24.314905 23.440653 23.712717