Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01184 ATGGCTACCCATTCTGTTGATTCTCGGAGCGGTTTCTGTTCTCAAACCAAGATTTACAACAGTCTCCGACCACCGTTATCGCTTCCGCCCTTATCTCAGCCACTTACCGTTGTTGGGCATGCCCTTTCTGTTCTCCGATCATCTCCTCCTCCCCCCAACACTCCTGCTCTCATCGACTCCGACTCCGGTGTCAGTGTCTCTTACGCTCTTTTCCTCCGTCAAATTCGAAACCTCACCTCTAACCTTAAAGCTCTCTATTCCTTCTCTAATGGTCAAGTGGCGTTTATTCTTTCACCCACTTCTCTGCAAATCCCTGTGTTGTATTTCGCTTTATTATCTCTTGGTGTTGTTGTCTCTCCGGCTAATCCTATCAGTTCCGAATCGGAGATTGCACACCAGGTTAGTCTCTGTAAACCGGCCATTGCCTTCGCTACTTCCTCAATGGCGTCTAAGATCCCGAGGCCTCCACTTGGCACTGTATTGATAGATTCGCCGGAGTTTCTTTCTTTGATGAATGAAATTAATCGATCGGATGGAGTGAACGATGGAATTTTCGATCTCAAAATCAATCAAAACGACTCTGCGGCGATTCTGTACTCTTCAGGGACTACCGGGCGAGTGAAAGGCGTTTTAATCTCTCACCGGAACCTCATAACGGCAATCACTGGGGTTCAAGTTTTAGATAAAACGCCCGTCGATGGAGAGATTGAGCCACATCCCGTTACTCTTTGTCTGTTACCTCTGTTTCATGTTTTCGGGTTCTTTATGTTATTTCGATCGATTTCAGAGGGCAATACATTGGTTTTGATGCGTAAGTTCGATTTCGAGAAAATGTTAAGTGCAGTGGAGAAGTATAGGGTTACATACATTCCGGTCTCTCCGCCGCTGATTGTGGCCATGGCCAAATCGGAGCTGGCAGCGAAGTATGATCTCAGTTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCTCTTGGTAAAGAGGTCATCGATAAATTCCATGTAAAGTTCCCCAACGTAGAAATTATTCAAGGATATGGGTTGACAGAGAGTACAGGAGCAGTATCAAGAACGGTAGGGCCTGAAGAATGCAGTAAAGCAGGTTCCGTCGGTCGCTTATTGGAAAATATGGAAGCCAAAATAGTTGATCCTTCATCTGGAGAAGCTTTACCTCCTGGTCACAAAGGAGAGCTTTGGGTACGAGGTCCAGGAATCATGAAAGGTTATGTTGGAGATGAAAGGGCAACTGCTGAAACCTTGCATCCTGAGGGATGGCTAAAGACTGGTGACCTTTGTTACTTTGATTCTGATGGATTACTCTACATTATTGATAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCCGAATTGGAACATTTGCTTCAATCCCACTCGGAAATCCTTGACGCTTCTGTGATACCCTATCCTGATGAAGACGCAGGACAAATTCCATTAGCTTATGTGGTTAGACAACCTGGAAGCAATATCAACGAAGCTCAAGTCATGGATTTCATTGCAAAACAGGTTGCACCATACAAAAAAATCCGAAGAGTTTTTTTTGTGAATGCTATCCCTAAATCGCCTGCAGGGAAGATTCTTAGGAGGGAGCTTGTTAAACATGCTCTCTCCCAAGGTTCAAGCAAGCTATAA 1662 45.07 MATHSVDSRSGFCSQTKIYNSLRPPLSLPPLSQPLTVVGHALSVLRSSPPPPNTPALIDSDSGVSVSYALFLRQIRNLTSNLKALYSFSNGQVAFILSPTSLQIPVLYFALLSLGVVVSPANPISSESEIAHQVSLCKPAIAFATSSMASKIPRPPLGTVLIDSPEFLSLMNEINRSDGVNDGIFDLKINQNDSAAILYSSGTTGRVKGVLISHRNLITAITGVQVLDKTPVDGEIEPHPVTLCLLPLFHVFGFFMLFRSISEGNTLVLMRKFDFEKMLSAVEKYRVTYIPVSPPLIVAMAKSELAAKYDLSSLQILGCGGAPLGKEVIDKFHVKFPNVEIIQGYGLTESTGAVSRTVGPEECSKAGSVGRLLENMEAKIVDPSSGEALPPGHKGELWVRGPGIMKGYVGDERATAETLHPEGWLKTGDLCYFDSDGLLYIIDRLKELIKYKAYQVPPAELEHLLQSHSEILDASVIPYPDEDAGQIPLAYVVRQPGSNINEAQVMDFIAKQVAPYKKIRRVFFVNAIPKSPAGKILRRELVKHALSQGSSKL* 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16667488 16670268 + Chy12G217840.1 Chy12g01184 238965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01184 553 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 26 543 - -
Chy12g01184 553 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Chy12g01184 553 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 543 - -
Chy12g01184 553 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Chy12g01184 553 Pfam AMP-binding enzyme 51 451 IPR000873 -
Chy12g01184 553 Gene3D - 33 446 IPR042099 -
Chy12g01184 553 CDD 4CL 42 541 - -
Chy12g01184 553 Gene3D - 447 548 IPR045851 -
Chy12g01184 553 SUPERFAMILY Acetyl-CoA synthetase-like 51 548 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00089 Chy-Chr5:618173 Chy12g01184 Chy-Chr12:16667488 3.52E-21 dispersed
Chy12g00816 Chy-Chr12:13246391 Chy12g01184 Chy-Chr12:16667488 1.11E-134 dispersed
Chy12g01184 Chy-Chr12:16667488 Chy02g02216 Chy-Chr2:26272015 9.08E-116 dispersed
Chy12g01184 Chy-Chr12:16667488 Chy12g01185 Chy-Chr12:16671727 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01184 K01904 - csv:101211791 1030.78