Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01185 ATGGCAGATCGGAACTCAAACTTCACCGCCGACCCCCATTCCATTGATCTTCGAAGCGGTTTCTGTCCTCAGACGAAGATTTTCCACAGCCTTCGTCCACCGCTCTCACTTCCACCATTATCTCACCCTCTCTCCGTCATCCAACACGCCTTTTCTCTCCTTCAATCATCTCCTCCCCCTCCAAACTCCACCCTTCTCATCGACTTCAACTCTGGCCTCCATTTGTCCTACACCGATTTCCTTCGTCAAATTCGAAACCTCGCCTCGAATCTCAAATCTCTAACCTCCCTATGCAATGGCCAAGTCGCGTTTATCCTCGCGCCGACTTCTCTCCAAATCCCTGTGTTGTATTTCGCTCTGTTATCTCTCGGCGTCGTTCTCTCTCCGGCTAATCCAACCAGCTCCGTTTCAGAAATTTCTCATCAGATTCAACTCAGTAAACCGGTCATTGCCTTCGCTACATCCTCAACCGCCTCCAAGCTCCCTACGCTTCGATTAGGCACCGTTCTCATCGATTCGCCTCATTTCCTCTCTATGTTGACTGAAACCAACGGATCCGATGGTATCCCCGACATCAAAATCGATCAATCCGACTCGGCGGCGATTCTTTACTCGTCAGGTACTACTGGACGAGTGAAAGGCGTGCTTCTGAGTCATCGGAACCTTATTGCGGTGAACGCAGGGCCTAATTTTCTTCAATTGGGGATCCAGGAAGGAGAAATGGAACCGCATCCGGTTGCTCTGTGTCCTTTGCCTTTGTTTCATGTTTTCGGATTCGTAATGTTGGTTCGAGCGGTTTCACGAGGAGATACGTTGGTTTTGATGGAGAGATTCGAATTCGAAGGGATGCTAAGAGCAGTGGAGAAGTACAGGGTTACGTACATTCCAGTTTCACCGCCGCTAGTGGTGGCGATGGCGAAATCGGAACTGGTGGGGAAATACGATCTGAGTTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCGCTTGGGAAAGAAGTGATCGATAAATTCCATCAGAAATTGCCCGGCGTTGAAATTGCCCAGGGGTATGGCTTGACAGAGAGTACAGCAGGGGCATCGAGAACTATAGATCCCGAGGAAATTAGCAACACGAAATCAGTAGGTCGCTTATCTGGAAATATGGAAGCCAAGATAGTGGATCCTGCATCTGGAGAAGCCTTGCTTCCTAACAACAAAGGAGAGCTTTGGCTGCGAGGTCCAACGATCATGAAAGGTTATGTCGGAGATGACAAGGCGACTACTGAAACCTTGGATCCAGATGGATGGCTAAAAACTGGTGATCTTTGCTATTTTGATTCAGATGGATTCCTCTACATTGTTGATAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCAGCAGAATTGGAACATTTGCTTCAATCCAACCCCGAAATTATTGACGCTGCCGTGATACCATATCCTGATGAAGAAGCTGGAGAGATTCCTATGGCTTATGTTGTTAGAAAGCCTGGAAGTAACATATCTGAGGCTCAAGTTATTGATTTCATTGCAAAACAGGTTGCACCGTACAAGAAAATTCGACGAGTCTCTTTTATCAACGCAATTCCTAAATCGCCTGCAGGTAAGATTCTGAGGAGAGAGCTTGCCAAACATGCTCTATCACATGATTCTAGTAAGCTGTAA 1677 47.29 MADRNSNFTADPHSIDLRSGFCPQTKIFHSLRPPLSLPPLSHPLSVIQHAFSLLQSSPPPPNSTLLIDFNSGLHLSYTDFLRQIRNLASNLKSLTSLCNGQVAFILAPTSLQIPVLYFALLSLGVVLSPANPTSSVSEISHQIQLSKPVIAFATSSTASKLPTLRLGTVLIDSPHFLSMLTETNGSDGIPDIKIDQSDSAAILYSSGTTGRVKGVLLSHRNLIAVNAGPNFLQLGIQEGEMEPHPVALCPLPLFHVFGFVMLVRAVSRGDTLVLMERFEFEGMLRAVEKYRVTYIPVSPPLVVAMAKSELVGKYDLSSLQILGCGGAPLGKEVIDKFHQKLPGVEIAQGYGLTESTAGASRTIDPEEISNTKSVGRLSGNMEAKIVDPASGEALLPNNKGELWLRGPTIMKGYVGDDKATTETLDPDGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSNPEIIDAAVIPYPDEEAGEIPMAYVVRKPGSNISEAQVIDFIAKQVAPYKKIRRVSFINAIPKSPAGKILRRELAKHALSHDSSKL* 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16671727 16675762 + Chy12G217850.1 Chy12g01185 238966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01185 558 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 30 547 - -
Chy12g01185 558 CDD 4CL 49 546 - -
Chy12g01185 558 Gene3D - 452 553 IPR045851 -
Chy12g01185 558 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Chy12g01185 558 Gene3D - 35 451 IPR042099 -
Chy12g01185 558 Pfam AMP-binding enzyme 61 456 IPR000873 -
Chy12g01185 558 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 30 547 - -
Chy12g01185 558 SUPERFAMILY Acetyl-CoA synthetase-like 61 552 - -
Chy12g01185 558 Pfam AMP-binding enzyme C-terminal domain 465 540 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00376 Chy-Chr7:3036561 Chy12g01185 Chy-Chr12:16671727 4.31E-166 dispersed
Chy12g01185 Chy-Chr12:16671727 Chy12g00816 Chy-Chr12:13246391 2.14E-138 dispersed
Chy12g01184 Chy-Chr12:16667488 Chy12g01185 Chy-Chr12:16671727 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01185 K01904 - csv:101213796 1036.94