Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01199 ATGTTTGCTGCTACAGTGTCAAGGTTGGTTAATAAAAAGGTTATTCTGGAGGATGCTCTTGGAGAACAATGGAACGTCACAGTCTCTGATTGTGGAGGATCCCTTGCCTTTCAAGAAGGATGGAATGCTTTTTCATCAGAGCATGGCCTAGAAACTGGAGATTTTTTGATCTTCAATCACATTATGGACTTGCACTTCAATGTTAGTATCTACACTAAAACTGGTTGTGAAAAAATAGAGTTCCCTAAAAAGCGCAATATGAGGAAAAGAACTAGTACTGGTCCTTTACTTGAGACAACAAATGAAGGTTTGACAAATCCACAAGCTTCATACCCCTCCTTGGGTTCTGAATCCAATATGGCATTATCTCAAGATAAATGTCACATAGCTGGTTCCCAAAACATGAATGTAAACTGGAACAAAAGGCCAAAGTCCAGGAGGAATGATGAAGGGCGTGGACCTCTCTGTAAAACAGACGTCGTTGATGATTCATATTGTTTCATCAACCAAAACAAGGATGTAGGACTGGAGGATAACAGAAGCCCCTTACTTGACTTGTTTTTCATGGAAATGCAGATGGTCAATCCCTCCACCAAGAAGAATACCACAAAAAATGTTGCTGAGGATGAGTTAAATCCTAACTGTACTTTCACTTCAGCAAATGCTGCAATCATTGTCCCCCTAGTTAACGATGCTCGAGTAGATATAAAAGGAGAGAAGGAAGCATTGCCTTTGGATACATCTGCTAACAAGATGATTGATAAAATTCAGTGTTTTGAGGAGGCTAGCATAAAGATGAGTGTCTCTGACACCGATCCTTGCCATGACAAAACTATTGAGGTTCCTTTTATTTCATCTGCAAAATATTCTGATACAAATGTTGAGCGTTTTTGTGAAACACCATTAAAAATGGTAAAAGCCTGCCAGAATGTACCAGCAATATGCAATACACCATCAACAATTACAAGACATGATCTGGGGTCTAATGAGAAACGTACTTCTTCCACTGAACATTGCCGTAGTGTAAAACAGGAGTACGCTCCAAATTCCTCAGAAGTTAGAAAATGGGACGTGACAAATATCATTAAGAAGGAATCATTGGAAATTAAAACTGAAGTGAACAACTTTGGAGACTCCATTAAACAAATACTGGAGCCAAAAGTCATTAAGGAGGAGTACATTGAGATGTCTAATCAAAGTGGTAGAGATAATAATGATGACAATAATTATGAAAATCCGATAGAAACTCCAGCCCATATCTCCTGTATAGTAGCTAAAGATACTCTATCTTTTCTGGAACTGCCGACAAGTTTGCACCTATCATGTTCGAGAGGCCGAAGAAATCCAGAGAAGAAGAAGATAGTGCTTCTTCGGGATCCCAGAAAGAGATTGTGGCCAATTCTTTACCATGAGATGCCTAATGTTAAAGTTCTAACAAGTGGCTGGGAAGCCTTTTGCTCTGGAAATGAAATCCAATCTGGAGACGAGTGCTTGTTTCGCATTGAGGACGAGATCGAGCGCATATTTGAAGTTAGTATTAGGAAATGTAAAAACTAG 1557 39.24 MFAATVSRLVNKKVILEDALGEQWNVTVSDCGGSLAFQEGWNAFSSEHGLETGDFLIFNHIMDLHFNVSIYTKTGCEKIEFPKKRNMRKRTSTGPLLETTNEGLTNPQASYPSLGSESNMALSQDKCHIAGSQNMNVNWNKRPKSRRNDEGRGPLCKTDVVDDSYCFINQNKDVGLEDNRSPLLDLFFMEMQMVNPSTKKNTTKNVAEDELNPNCTFTSANAAIIVPLVNDARVDIKGEKEALPLDTSANKMIDKIQCFEEASIKMSVSDTDPCHDKTIEVPFISSAKYSDTNVERFCETPLKMVKACQNVPAICNTPSTITRHDLGSNEKRTSSTEHCRSVKQEYAPNSSEVRKWDVTNIIKKESLEIKTEVNNFGDSIKQILEPKVIKEEYIEMSNQSGRDNNDDNNYENPIETPAHISCIVAKDTLSFLELPTSLHLSCSRGRRNPEKKKIVLLRDPRKRLWPILYHEMPNVKVLTSGWEAFCSGNEIQSGDECLFRIEDEIERIFEVSIRKCKN* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16767473 16770257 - Chy12G217990.1 Chy12g01199 238980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01199 518 CDD B3_DNA 12 71 IPR003340 GO:0003677
Chy12g01199 518 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1 2 514 - -
Chy12g01199 518 SUPERFAMILY DNA-binding pseudobarrel domain 3 76 IPR015300 -
Chy12g01199 518 MobiDBLite consensus disorder prediction 87 107 - -
Chy12g01199 518 Gene3D - 407 517 IPR015300 -
Chy12g01199 518 Gene3D - 1 76 IPR015300 -
Chy12g01199 518 ProSiteProfiles B3 DNA-binding domain profile. 455 517 IPR003340 GO:0003677
Chy12g01199 518 CDD B3_DNA 428 515 IPR003340 GO:0003677
Chy12g01199 518 SMART B3_2 2 74 IPR003340 GO:0003677
Chy12g01199 518 SMART B3_2 423 517 IPR003340 GO:0003677
Chy12g01199 518 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 514 IPR044837 -
Chy12g01199 518 MobiDBLite consensus disorder prediction 92 107 - -
Chy12g01199 518 ProSiteProfiles B3 DNA-binding domain profile. 1 74 IPR003340 GO:0003677
Chy12g01199 518 SUPERFAMILY DNA-binding pseudobarrel domain 431 514 IPR015300 -
Chy12g01199 518 Pfam B3 DNA binding domain 11 71 IPR003340 GO:0003677
Chy12g01199 518 Pfam B3 DNA binding domain 446 507 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01199 - - - csv:101210561 993.416
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01199 Chy-Chr12:16767473 Chy02g00946 Chy-Chr2:6247063 7.91E-08 dispersed
Chy12g01199 Chy-Chr12:16767473 Chy04g00568 Chy-Chr4:6018824 1.56E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g901 . . . . . . . . Cmo13g00811 Cmo18g00189 . . . . . Cpe20g00331 . . . . . . . . . . . . . . . . Cone16ag0046 . . Lsi02g00470 Csa01g00928 Chy12g01199 Cme12g01623 . . . . . . . . . . . Cma13g00779 . Car13g00627 Car18g00205 Cpe09g00985 . Bhi08g01703 Tan05g2910 . . . . . Cla03g00327 Cam03g0344 Cec03g0335 Cco03g0348 Clacu03g0345 Cmu03g0951 Cre03g0643 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005615 0 3 0 1 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 6 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18880 PF02362 B3 1.00E-08 CL0405 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01199 Chy_Chr12 FPKM 9.245798 9.53436 3.986446 4.514282 11.823963 10.258821 13.497079 2.260289 2.316157 2.612753