Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01209 ATGGCGCTTGTACACCAACACCATCTCACATACCCATTTCTTTCCATTGGCGGGGCCAATCTGAAACAAAATACTTCCAATTCTTTTTCATTTTTTCAATCCAATACCCAGAAGCTCGCCTGCTGCTTATGTGCAGCATCCCCGGACCCCACCACTCAATCTCCATCCCCCATTTTCCTCCATTTTTTCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTCCTTCTAAGGAAGGTCATGGAGGTAACAAGACGGAAGAGGATTGGAACGACCCATTATTCAGATTTTTTAAATCTCGAACTTCAACGACGCAAGACCCATCACGTGAAAGCAAATTGCCCCTCCAAAAGAACCGACGTTCGTCCTGGCATCTTGCCTCCGATGTTGAATTTTTCAATGAAGCTGAAGTTACACTCGAGGAAGACAAGGAACAATTGCGTTCTGCGAGTCGGAATTCTAGGGTCTTACCAGATGGTCCTGTCGGAGAAATAGTGGGAATTGCAAGGAATTTGTCGCAAAATATGACTCTGGGGGAGGCTTTGGGAGAATTTGAAGGAAGAATTAGCGAGAAGGAATGTTGGGAGGTGCTGCGTTTGTTGGGTGAGGAGAATCTTGTGGTATGTTGTTTGTATTTCTTTGAATGGATGGGTTTGCAGGAGACTTCGCTTGTTACATCTCGTGCCTATTCTCTTCTATTTCCATTGTTGGGAAGAGCTGGAATGGGAGAGAAAATTATGGTCTTGTTCAAGAACCTTCCACTCAAGAAGGAATTTCAGGATGTTCATGTCTATAACTCTGCAATTTCTGGACTTATGGTCTGTAAGAGGTATGATGATGCTTGCAAGGTGTATGAGGCCATGGAAACAAATAATGTTAATCCAGATCATGTGACATGTTCTATAATGATTACAGTTATGAGAAAAATTGGCCGTAGTGCAAAGGATTCATGGGATTACTTTGAGAAAATGAACCAAAAAGGAGTAAAATGGAGTTCAGAAGTTTTGGGTGCTCTGATTAAATCGTTCTGCAATGAGGGGCTGAAGAGTCAAGCACTTATCATACAATTGGACATGGAGAAGAAAGGGGTTGCTTCGAACGTGATCATGTATAATACGATCATGGATGCTTTCAGTAAATCGAATCAAATCGAGGAAGCTGAAGGTGTCTTTGCTGAAATGAAATCTAAAGGAGTGAAACCAACGAGTGCAAGCTTTAACATCTTGATGAATGCATACAGTAGGAGGATGCAACCTGAGATTGTTGAGAAGCTCCTGGTTGAAATGAAGGATATGGGATTGGAGCCTAATGTAAAGTCATACACTTGCTTGATTAGTGCTTATGGGAGGCAGAAGAAAATGAGTGACATGGCTGCAGATGCATTTTTGAGAATGAAAAAAAATGGTATTAGGCCAACCTCTCATTCATATACAGCTTTGATTCATTCTTATTCTGTTAGCGGTTGGCATGAGAAAGCTTACTCCGCATTTGAGAACATGTTGCGTGAAGGTTTAAAGCCATCCATTGAAACTTACACGACTCTACTCGATGCGTTTAGGCGTGCTGGTGATACAGCGTCGTTGATGAAAATATGGAAGTTAATGATTAGAGAAAAAATACTAGGGACAAGAGTAACATTTAACACACTGCTAGATGGGTTTGCAAAACACGGTCATTATGTTGAGGCAAGAGATGTGATCTCTGAGTTTGATAAGATTGGGTTACAACCAACTGTAATGACATACAACATGTTGATGAATGCATATGCTAGGGGAGGTCAACATTTAAAGCTGCCACAGCTGCTGCAAGAGATGGCTGCTCGGGACCTAAAACCCGACTCCGTTACTTATTCTACCATGATTTATGCCTTTTTACGTGTTCGTGATTTCAAAAGAGCTTTCTTCTATCACAAGAAGATGGTAAAAAGTGGACAAGTGCCTGATGTAAAGTCATACCAGAAACTTAAATCGATCTTGGATGTAAAACTTGCTACAAAAAACAGGAAAGACAAGAGTGCCATTCTTGGTATAATAAACAGCAAAATGGGTATGGTGAAAGCTAAGAAGCAGGGCAAGAAAGATGAGTTTTGGAAGACCAAGAGAAGGCATGTATCCGCATCTCCAGGAAAAATGGCGTCAAATGAAGGATTTCTAACTGAAGAGCAGCGGGAAGTGCTGAAAATAGCAAGTCAGAATGTGGATGTTTTGTCATCCTCTCCAAAATCTCCCAAAGGCTCACTTCCTGAATATCATATAAAAGCTCCTGCTGGTGGAAAGGTTTCGGCACCTGGAGTTGGTGTGAAGCACGTGCGCAGATCTCACTCTGGGAAGTATATTAGGGTGAAAAAGGATGGGGCTGGTGGTAAGGGCACCTGGGGTAAATTACTCGACACTGATGGTGACTCTCATATTGACAGAAATGATCCTAACTATGACAGTGGCGAGGAACCATATCAACTCGTTGGGTCCACTGTATCAGACCCCTTGGATGATTATAAGAAATCTGTTGTATCGATTATAGAGGAATACTTTAGTACTGGCGACGTGGAATTGGCAGCATCTGATCTTGGAGATCTAGGCAAAAGTGACTATCATCCTTACTTCATTAAACGGCTAATATCTATGGCAATGGACAGACACGATAAGGAGAAGGAAATGGCTTCAGTTCTTCTCTCAGCGTTGTATGCTGATGTTATCAGTCCTGCCCATATAAGAGATGGATTTTTTATGTTACTAGAATCTGCTGATGATCTTGCAGTCGATATATTGGATGCAGTCGATATCCTTGCTTTGTTCTTAGCTCGTGCTGTAGTTGATGACATACTTCCCCCAGCATTTCTAGCCAGGGCAAGGAAGGCCTTGTCGGAATCATCTAAAGGAACTCAGGCTATTCAGACTGCTGAGAAGAGCTATCTCTCAGCTCCTCATCATGCAGAGCTTGTGGAGAAGAAATGGGGAGGCAGCACACACTTTACCGTTGAGGAAGTGAAGAAAAAGATTGCTTATCTCTTGAGGGAATATGTTGAGAATGGAGATACTTTTGAGGCTTGCAGGTGTATAAGACAGTTAGGTGTTACATTCTTTCACCATGAGGTTGTTAAGAGGGCTTTGACTCTTGCCATGGAAATTCGAACAGCAGAACCCCTGATACTGAAACTTCTGAAGGAAGCTGCTGAGGAAGGTCTTATAAGTTCAAGTCAAATGGTCAAGGGATTTTCTCGGTTGGCAGAGAGCCTGGATGACCTTGCTCTTGACATACCATCAGCAAAATCTTTGTTTGAATCGTTGATACCAAGGGCCATATCTGAAGGATGGCTTGATGGTTCCTTTATGAAATCTTCAGAGGAAGATGCGGATATTGGATCGAAAGATGAAAAATTAAGGCGCTACAAGGAAGAGGTTGTGACTATTATTCATGAATATTTTCTTTCAGATGACATTCCTGAATTAATACGGAGCCTAGAAGATCTGGGTGCACCCGAGTATAACCCCGTCTTTTTGAAGAGGCTTATTACACTAGCAATGGATAGGAAAAACAGAGAAAAAGAAATGGCTTCGGTGCTCCTTTCAGCTCTTCATATTGAGATATTTTCTACAGAGGATATAGTCAATGGTTTTGTGATGCTATTGGAGTCTGCAGAAGATACAGCGCTAGACATCTTGGATGCATCAAATGAGCTTGCTCTCTTCCTGGCCAGAGCTGTGATTGACGATGTTTTGGCTCCTCTGAATCTGGAGGATATCTCTGGCAGGTTGATCCCGAATTGTACTGGAAGTGAGACTGTCCGAATGGCACGGTCATTAATTGCAGCTCGTCATGCTGGTGAAAGGCTTTTGAGATGCTGGGGTGGTGGAACTGGCTGGGCAGTGGAGGATGCAAAGGACAAGATTCAGAAACTCTTGGAGGAGTACGAAAGTGGAGGCGTCGTGAGTGAAGCTTGCCAGTGTATCCGTGATCTAGGGATGCCTTTCTTCAACCATGAGGTTGTGAAGAAAGCATTGGTTATGGCCATGGAGAAGAAAAATGACAGGATTCTAGATCTGCTGCAGGAATGCTTCAATGTCGGCCTGATCACCATCAACCAAATGACTAAAGGCTTCTCTAGAATCAAAGACAGCCTCGACGATCTCGCACTTGACATTCCAAATGCAAGCAAGAAGTTCACATCCTACGTGGAGCATGCCCAGAAGAAAGGATGGCTCTTACCATCGTTCGGATCATCTGCTGGTGCAGATTCTTCACTGCTCTTGTCTGCAGCTTCCTGA 4263 42.88 MALVHQHHLTYPFLSIGGANLKQNTSNSFSFFQSNTQKLACCLCAASPDPTTQSPSPIFLHFFEEEEEEEEEEVPSKEGHGGNKTEEDWNDPLFRFFKSRTSTTQDPSRESKLPLQKNRRSSWHLASDVEFFNEAEVTLEEDKEQLRSASRNSRVLPDGPVGEIVGIARNLSQNMTLGEALGEFEGRISEKECWEVLRLLGEENLVVCCLYFFEWMGLQETSLVTSRAYSLLFPLLGRAGMGEKIMVLFKNLPLKKEFQDVHVYNSAISGLMVCKRYDDACKVYEAMETNNVNPDHVTCSIMITVMRKIGRSAKDSWDYFEKMNQKGVKWSSEVLGALIKSFCNEGLKSQALIIQLDMEKKGVASNVIMYNTIMDAFSKSNQIEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHSYSVSGWHEKAYSAFENMLREGLKPSIETYTTLLDAFRRAGDTASLMKIWKLMIREKILGTRVTFNTLLDGFAKHGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLQEMAARDLKPDSVTYSTMIYAFLRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIINSKMGMVKAKKQGKKDEFWKTKRRHVSASPGKMASNEGFLTEEQREVLKIASQNVDVLSSSPKSPKGSLPEYHIKAPAGGKVSAPGVGVKHVRRSHSGKYIRVKKDGAGGKGTWGKLLDTDGDSHIDRNDPNYDSGEEPYQLVGSTVSDPLDDYKKSVVSIIEEYFSTGDVELAASDLGDLGKSDYHPYFIKRLISMAMDRHDKEKEMASVLLSALYADVISPAHIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALSESSKGTQAIQTAEKSYLSAPHHAELVEKKWGGSTHFTVEEVKKKIAYLLREYVENGDTFEACRCIRQLGVTFFHHEVVKRALTLAMEIRTAEPLILKLLKEAAEEGLISSSQMVKGFSRLAESLDDLALDIPSAKSLFESLIPRAISEGWLDGSFMKSSEEDADIGSKDEKLRRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEYNPVFLKRLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEDISGRLIPNCTGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIQKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRILDLLQECFNVGLITINQMTKGFSRIKDSLDDLALDIPNASKKFTSYVEHAQKKGWLLPSFGSSAGADSSLLLSAAS* 1421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16821631 16830597 - Chy12G218090.1 Chy12g01209 238990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01209 1420 ProSiteProfiles MI domain profile. 830 951 IPR003891 -
Chy12g01209 1420 ProSiteProfiles MI domain profile. 994 1115 IPR003891 -
Chy12g01209 1420 SMART ma3_7 995 1106 IPR003891 -
Chy12g01209 1420 SMART ma3_7 1129 1240 IPR003891 -
Chy12g01209 1420 SMART ma3_7 1292 1401 IPR003891 -
Chy12g01209 1420 SMART ma3_7 831 942 IPR003891 -
Chy12g01209 1420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Chy12g01209 1420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 577 611 IPR002885 -
Chy12g01209 1420 Gene3D Tetratricopeptide repeat domain 486 747 IPR011990 GO:0005515
Chy12g01209 1420 Gene3D Tetratricopeptide repeat domain 316 467 IPR011990 GO:0005515
Chy12g01209 1420 Gene3D - 824 972 - -
Chy12g01209 1420 Gene3D - 1122 1271 - -
Chy12g01209 1420 TIGRFAM PPR: pentatricopeptide repeat domain 263 295 IPR002885 -
Chy12g01209 1420 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Chy12g01209 1420 TIGRFAM PPR: pentatricopeptide repeat domain 614 648 IPR002885 -
Chy12g01209 1420 TIGRFAM PPR: pentatricopeptide repeat domain 544 571 IPR002885 -
Chy12g01209 1420 TIGRFAM PPR: pentatricopeptide repeat domain 510 539 IPR002885 -
Chy12g01209 1420 TIGRFAM PPR: pentatricopeptide repeat domain 404 437 IPR002885 -
Chy12g01209 1420 TIGRFAM PPR: pentatricopeptide repeat domain 439 472 IPR002885 -
Chy12g01209 1420 TIGRFAM PPR: pentatricopeptide repeat domain 474 507 IPR002885 -
Chy12g01209 1420 TIGRFAM PPR: pentatricopeptide repeat domain 580 613 IPR002885 -
Chy12g01209 1420 Coils Coil 132 152 - -
Chy12g01209 1420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 542 576 IPR002885 -
Chy12g01209 1420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 471 IPR002885 -
Chy12g01209 1420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Chy12g01209 1420 Pfam MA3 domain 832 942 IPR003891 -
Chy12g01209 1420 Pfam MA3 domain 1130 1239 IPR003891 -
Chy12g01209 1420 Pfam MA3 domain 995 1106 IPR003891 -
Chy12g01209 1420 Pfam MA3 domain 1293 1400 IPR003891 -
Chy12g01209 1420 Gene3D - 1279 1407 - -
Chy12g01209 1420 Gene3D - 981 1114 - -
Chy12g01209 1420 Gene3D Tetratricopeptide repeat domain 161 315 IPR011990 GO:0005515
Chy12g01209 1420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 612 646 IPR002885 -
Chy12g01209 1420 SUPERFAMILY ARM repeat 991 1111 IPR016024 -
Chy12g01209 1420 MobiDBLite consensus disorder prediction 65 89 - -
Chy12g01209 1420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Chy12g01209 1420 SUPERFAMILY ARM repeat 829 989 IPR016024 -
Chy12g01209 1420 Pfam Pentatricopeptide repeat domain 496 552 IPR002885 -
Chy12g01209 1420 Pfam Pentatricopeptide repeat domain 423 483 IPR002885 -
Chy12g01209 1420 SUPERFAMILY ARM repeat 1288 1405 IPR016024 -
Chy12g01209 1420 ProSiteProfiles MI domain profile. 1291 1410 IPR003891 -
Chy12g01209 1420 Pfam PPR repeat family 260 305 IPR002885 -
Chy12g01209 1420 Pfam PPR repeat family 366 413 IPR002885 -
Chy12g01209 1420 Pfam PPR repeat family 576 623 IPR002885 -
Chy12g01209 1420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Chy12g01209 1420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Chy12g01209 1420 SUPERFAMILY ARM repeat 1126 1284 IPR016024 -
Chy12g01209 1420 MobiDBLite consensus disorder prediction 75 89 - -
Chy12g01209 1420 MobiDBLite consensus disorder prediction 688 711 - -
Chy12g01209 1420 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 710 1403 - -
Chy12g01209 1420 ProSiteProfiles MI domain profile. 1128 1249 IPR003891 -
Chy12g01209 1420 PANTHER PROGRAMMED CELL DEATH 4 710 1403 IPR039778 GO:0045892
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01209 - - - csv:101209816 1359.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02139 Chy-Chr2:25616123 Chy12g01209 Chy-Chr12:16821631 4.42E-07 dispersed
Chy07g00318 Chy-Chr7:2604723 Chy12g01209 Chy-Chr12:16821631 1.44E-08 dispersed
Chy12g01209 Chy-Chr12:16821631 Chy02g01509 Chy-Chr2:12702187 1.60E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003831 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01209 Chy_Chr12 FPKM 1.603878 1.819942 45.292351 44.727268 246.141068 264.789215 247.602386 32.370148 29.848894 34.722816