Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01211 ATGGCACCGCCTACACTCCCTCTCTCTCTCCTCTCCCTCTTCCTCTTCTCCATTTCTCTCTCCGCCGCTCTCTCCCCCAACCCTGCTGCCGTTTCTAACCCAGAACTCGTCGTACAAGAAGTACACAGGAGCATAATCAATGCAACGAAGAGGAGGAATTTGGGGTATCTCTCATGTGGGACTGGAAATCCAATCGACGATTGCTGGCGGTGCGATTCCAATTGGGAGAAAAATCGTCAGAGATTAGCTGATTGTGGGATCGGTTTCGGCAAAAATGCCATCGGGGGTCGAGACGGAAAAATCTACGTCGTTACTGACTCCGGCGACGACGATCCCGTCAACCCCAAACCAGGAACTCTCCGTTACGCCGTAATCCAAGACGAACCCCTTTGGATCATCTTCGCTCGCGACATGGTCATTCGATTGAAAGAGGAGCTGATTATGAATTCCTTCAAAACCATCGACGGCCGTGGCGCTAGTGTCCATATCGCCGGTGGGCCTTGCATTACGATTCAGTACGTGACGAACATTATAATCCATGGTCTCAACATTCACGACTGCAAACAAGGGGGAAACACAGATGTGAGAGATTCCCCTCGACATTTTGGATTCAGAACCATATCGGACGGTGACGGCGTTTCGATCTTCGGCGGAAGCCATGTTTGGGTTGATCATTGCTCTTTATCAAACTGCAATGACGGGTTAATCGACGCGATTCATGGGTCTACAGCGATTACCATTTCGAACAATTACATGACGCATCATGATAAAGTGATGTTGTTGGGGCACAGTGATTCGTATACTCAGGACAAGAATATGCAAGTCACCATTGCTTTTAATCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCCAGATGCAGACATGGGTATTTTCATGTGGTGAACAATGACTATACACATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCAACCATCAACAGTCAAGGGAACAGATTTGTTGCTCCAAATGACAGATTCAGCAAAGAGGTGACAAAATACGAGGATGCACCAGAGAGTGAGTGGAAGAATTGGCATTGGAGGTCAGAAGGAGATCTCATGTTAAACGGTGCGTTTTTCACGGCCTCGGGTGCCGGAGCGTCGTCCAGTTACGCAAGAGCGTCGAGCTTAGGAGCAAGACCGTCGTCGCTCGTGGGTACAATTACGACCAATGCAGGTGCACTGAACTGCAGAAAGGGCTCTCGTTGCTGA 1236 49.03 MAPPTLPLSLLSLFLFSISLSAALSPNPAAVSNPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDSNWEKNRQRLADCGIGFGKNAIGGRDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKNWHWRSEGDLMLNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC* 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16852088 16854005 + Chy12G218110.1 Chy12g01211 238992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01211 411 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Chy12g01211 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Chy12g01211 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Chy12g01211 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Chy12g01211 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Chy12g01211 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Chy12g01211 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Chy12g01211 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Chy12g01211 411 Pfam Pectate lyase 147 328 IPR002022 -
Chy12g01211 411 SUPERFAMILY Pectin lyase-like 37 406 IPR011050 -
Chy12g01211 411 Gene3D - 62 404 IPR012334 -
Chy12g01211 411 PANTHER PECTATE LYASE 18-RELATED 13 408 IPR045032 GO:0030570
Chy12g01211 411 PANTHER PECTATE LYASE 13 408 - -
Chy12g01211 411 SMART amb_all 137 334 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00262 Chy-Chr5:2297202 Chy12g01211 Chy-Chr12:16852088 0 dispersed
Chy06g00395 Chy-Chr6:2675533 Chy12g01211 Chy-Chr12:16852088 0 dispersed
Chy10g01285 Chy-Chr10:17374876 Chy12g01211 Chy-Chr12:16852088 9.44E-179 dispersed
Chy12g01100 Chy-Chr12:16015940 Chy12g01211 Chy-Chr12:16852088 1.98E-149 dispersed
Chy12g01211 Chy-Chr12:16852088 Chy12g01326 Chy-Chr12:17608593 4.49E-174 dispersed
Chy09g00385 Chy-Chr9:3383806 Chy12g01211 Chy-Chr12:16852088 0 transposed
Chy12g01211 Chy-Chr12:16852088 Chy03g01694 Chy-Chr3:18585075 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01211 K01728 - csv:101209736 792.727