Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01217 ATGGCATCTCTTTCAGAGAAATATGGTCCTCTAATGCTTCTTAAACTAGGCCAAACCCCAACACTCATTGTCTCATCATCCAAACTAGCGAAAGAAGTAATGAAATCCCATGATAGCATCTTCTCAAGCAGATCCCAAAACACAGCTGCAAAATGTTTACTTTATGGATGCCGAGATCTGGCCTTTGCTTCCTATGGAGAGCATTGGAGACAAGCCAAGAAATTGTGTGTTTTGGAGCTTTTGAGTCCCAAAAGAGTTGAGTATTTCCAATATATTAGAGATGAAGAAGTTGAAAAGCTCTTAAAAAGGATTGGTGGTGAGTCGTGTGGTGTGATCAATCTCAACCAACTTTTGGTATCAACTTCAAACCATATAGTGGGGAGATGTGTTTTGGGTGAGAAGTATAAGGAAGAAAAGGATGGGTTTGGTGAAGTTACAAGGAAGGATATGGTGCTTTTAACAAGGTTTTGTGTTGGGGACGCTTTTCCTTGGTTTGGATGGATTGATGTGTTGAGAGGATTTCGTGGAGAACTCAAAGCTTGTTTTGAAACATTGGATAAGCTTTTTGAGAAAGTGATTGAAGAGCGTAGGGAAAAATTGAAGATTGGTGATGATAATAATGGATGTTGTGATGAGAAGGATTTTGTGGGGATTATACTCAAATTGCAACAACAAGATGCTCTTCATTATCATTTCACTATGGAAGATTTCAAAGCAATTTTACTGGATATGTTTGTAGGTGGAACAGACACAACAGCAACAGGTTTAGAATGGACAATGGCAGAGCTGATGAAAAACACAACAATCATGAAAAAAGTTCAAAAAGAGGTCAGAACAATAGTTGGTAAAAAACCAAAGATTGAAACAAACGACATTCAAAAAATGGATTACATGAAATGTGTTATAAAAGAATCTCTAAGGCTCCATCCTCCTATTCCCCTCATGCTTCCAAGAGAAACAATCGAAAATGTCAACCTTGAAGGTTACCAAATTCCACCAAAAACAAGGGTTTGGATCAATGCTTGGGCAATTCAAAGAGACCCCATGATGTGGGAAAACCCAAATAAGTTCATACCAGAGAGATTCATGGAGGAAAAGAAATCAGTTGATTTCAAAGGTCATGACTTTGAGTTCATTCCATTTGGGAGTGGAAGAAGGAAGTGCGTTGGAATGTCATTTGGAATTGCTTCTTTTGAATATGTATTGGCCAATCTTCTTCATTGGTTTGATTGGAAGCTTCCAGATGGGGAGTTGTTGGATATGACTGAAGAAAATGGTCTCTCTGTTTCTAAGAAACTTCCTCTCAAGCTTATCCCAATTTCATTTTCTCCCTAA 1335 38.2 MASLSEKYGPLMLLKLGQTPTLIVSSSKLAKEVMKSHDSIFSSRSQNTAAKCLLYGCRDLAFASYGEHWRQAKKLCVLELLSPKRVEYFQYIRDEEVEKLLKRIGGESCGVINLNQLLVSTSNHIVGRCVLGEKYKEEKDGFGEVTRKDMVLLTRFCVGDAFPWFGWIDVLRGFRGELKACFETLDKLFEKVIEERREKLKIGDDNNGCCDEKDFVGIILKLQQQDALHYHFTMEDFKAILLDMFVGGTDTTATGLEWTMAELMKNTTIMKKVQKEVRTIVGKKPKIETNDIQKMDYMKCVIKESLRLHPPIPLMLPRETIENVNLEGYQIPPKTRVWINAWAIQRDPMMWENPNKFIPERFMEEKKSVDFKGHDFEFIPFGSGRRKCVGMSFGIASFEYVLANLLHWFDWKLPDGELLDMTEENGLSVSKKLPLKLIPISFSP* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16915450 16917604 + Chy12G218170.1 Chy12g01217 238998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01217 444 PRINTS E-class P450 group I signature 236 253 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 PRINTS E-class P450 group I signature 121 139 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 PRINTS E-class P450 group I signature 29 50 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 PRINTS E-class P450 group I signature 299 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 PRINTS E-class P450 group I signature 388 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 PRINTS E-class P450 group I signature 256 282 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 PRINTS E-class P450 group I signature 378 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 PRINTS E-class P450 group I signature 5 24 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 PRINTS E-class P450 group I signature 340 364 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 Gene3D Cytochrome P450 1 437 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 PRINTS P450 superfamily signature 300 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 PRINTS P450 superfamily signature 247 264 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 PRINTS P450 superfamily signature 379 388 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 381 390 IPR017972 GO:0005506|GO:0016705
Chy12g01217 444 SUPERFAMILY Cytochrome P450 2 439 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 2 441 - -
Chy12g01217 444 Pfam Cytochrome P450 2 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01217 444 PANTHER CYTOCHROME P450 71B11-RELATED 2 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01217 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101208836 876.315
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01217 Chy-Chr12:16915450 Chy12g01221 Chy-Chr12:16937742 0 dispersed
Chy12g01227 Chy-Chr12:16993330 Chy12g01217 Chy-Chr12:16915450 1.05E-31 dispersed
Chy12g01230 Chy-Chr12:17019817 Chy12g01217 Chy-Chr12:16915450 2.22E-60 dispersed
Chy12g01217 Chy-Chr12:16915450 Chy12g01218 Chy-Chr12:16918957 5.43E-59 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g861 . . Bda06g00623 Bda15g00532 . . . Bma12g01061 . Cmo18g00175 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0183 . Lsi02g00436 Csa01g00909 Chy12g01217 Cme12g01643 Blo13g00154 Blo15g00245 . . . . . . . . . . . . . . . Bhi08g01683 . . . Hepe07g2179 . . Cla03g00302 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01217 Chy_Chr12 FPKM 5.971029 5.709225 0.948361 0.0 1.450377 1.753028 1.340502 2.392274 3.260407 3.658774