Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01221 ATGGATCCAACATCCTACAAAATTTTCCTCCAACTTGTGCAGTACTCGCCCTATGGAAACAACATTGACGTCAATAATCCCACCTCTTCTTCAGTACTCATCTTCCTCCTCTTCCTCTTCCTCTTCCTCTTCTTCATACCTTCACTCAAATTCTTGTCCACCAAAAACCCCAAAACCAACAACTTACCACCATCACCACCACAACTCCCAATAATTGGCAACCTTCACCAACTAGGCAGCCTCCCACACCGCTCAGTGGCATCTCTTGCAGAGAAATATGGGCCTCTCATGCTCCTCAAACTAGGTCAAACCCCAACTCTTGTTGTCTCATCAACAAAACTAGCTAACGAAGTAATGAAGTCCCATGATACCATCTGCTCAAACAGAGTCCAAAACACAGCTGCAAAGTCCATATTCTATGGATGTCATGATGTGGCCTTTGCTTCCTATGGAGAACATTGGAGACAGGCAAGAAAATTATGTGTTCTGGAGCTCTTGAGTTCCAAAAGAGTTGAGTCTTTCCAACACGTTAGAGATGAAGAAGTTGCAAGGCTAGTGAAAAAGATTGAAAATTGTAATAAGGATAACCCATTATTGTGTGTGATCAATCTCAATGAGCTTTTGTTGTCAACTTCAAACAATATTGTGGGGAGATGTGTTTTGGGAGAGAAGTTTGTGGAAGAACATGATGGATACTTCGGAGAAGTTACAAGAAAGGCTATGGTGCTTTTGGCTGAGTTTTGTGTTGGGGATGTTTTTCCTTGGCTTGGATGGATTGATGTTTTGAGAGGATTTCATGGTCAACTCAAAGCTTGTGTTGAAACATTGGATAAGCTTGTTGAGAAAGTGATTGAAGAACGTAGGGAAAAATTGAAGAGTGGTGATGATCTACCTTCTGAGAAGGATTTTGTGGGGGTTATGCTCAAATTGCAACAACAAGACGCACTTGATTATCATTTCACTATGGAAAATTTCAAAGCAATTTTACTGGATATGTTTGTAGCTGGAACAGACACAACAGCAGTAAGTTTGGAATGGTCAATGGCAGAACTGATGAGAAACCCAACAGCCATGAAAAAAGTTCAAGAAGAGGTCAGAACAATAGTTGGTAAAAAGACAAAGATTGAAACAAAAGACATTCAAAAAATGGAGTACATGAAATGTGTTATAAAAGAAACTTTAAGACTTCACCCACCAGGTCCTTTTTTGTTGCCAAGAGAAACAACGGGAAGTTTCAACCTTGAAGGCTACCAAATTCCACCAAAAACAAGGGTTTGGATCAATGCTTGGAAAATTCAAAGAGACCCCAAAATCTGGAAAAGCCCAAACCAGTTCGTTCCAGAGAGATTCATGGAGGAAAAGAAATCAGTTGATTTCAAAGGTCATGACTTTGAGTTCATTCCATTTGGGAGTGGAAGAAGGAAGTGCGTTGGATTGTCATTTGCTATTGCTTCTTTTGAACATGTATTGGCCAATCTTCTTTATTGGTTTGATTGGAACCTTCCATCTGGGGGGATGTTGGATATGACTGAACAACATGGTCTCGCTATTTCCAAGAAATTTTCACTCCATCTTATTCCAATTCCATACAGTGTGTAA 1599 40.15 MDPTSYKIFLQLVQYSPYGNNIDVNNPTSSSVLIFLLFLFLFLFFIPSLKFLSTKNPKTNNLPPSPPQLPIIGNLHQLGSLPHRSVASLAEKYGPLMLLKLGQTPTLVVSSTKLANEVMKSHDTICSNRVQNTAAKSIFYGCHDVAFASYGEHWRQARKLCVLELLSSKRVESFQHVRDEEVARLVKKIENCNKDNPLLCVINLNELLLSTSNNIVGRCVLGEKFVEEHDGYFGEVTRKAMVLLAEFCVGDVFPWLGWIDVLRGFHGQLKACVETLDKLVEKVIEERREKLKSGDDLPSEKDFVGVMLKLQQQDALDYHFTMENFKAILLDMFVAGTDTTAVSLEWSMAELMRNPTAMKKVQEEVRTIVGKKTKIETKDIQKMEYMKCVIKETLRLHPPGPFLLPRETTGSFNLEGYQIPPKTRVWINAWKIQRDPKIWKSPNQFVPERFMEEKKSVDFKGHDFEFIPFGSGRRKCVGLSFAIASFEHVLANLLYWFDWNLPSGGMLDMTEQHGLAISKKFSLHLIPIPYSV* 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16937742 16939542 + Chy12G218210.1 Chy12g01221 239002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01221 532 PRINTS E-class P450 group I signature 211 229 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 PRINTS E-class P450 group I signature 476 499 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 PRINTS E-class P450 group I signature 344 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 PRINTS E-class P450 group I signature 324 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 PRINTS E-class P450 group I signature 428 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 PRINTS E-class P450 group I signature 387 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 PRINTS E-class P450 group I signature 466 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 PRINTS E-class P450 group I signature 90 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 35 529 - -
Chy12g01221 532 PRINTS P450 superfamily signature 335 352 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 PRINTS P450 superfamily signature 467 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 PRINTS P450 superfamily signature 476 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 SUPERFAMILY Cytochrome P450 63 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 Gene3D Cytochrome P450 48 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 PANTHER CYTOCHROME P450 71B11-RELATED 35 529 - -
Chy12g01221 532 Pfam Cytochrome P450 63 517 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01221 532 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 469 478 IPR017972 GO:0005506|GO:0016705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01221 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101207378 991.875
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01214 Chy-Chr12:16896843 Chy12g01221 Chy-Chr12:16937742 6.04E-43 dispersed
Chy12g01215 Chy-Chr12:16902687 Chy12g01221 Chy-Chr12:16937742 3.48E-45 dispersed
Chy12g01217 Chy-Chr12:16915450 Chy12g01221 Chy-Chr12:16937742 0 dispersed
Chy12g01218 Chy-Chr12:16918957 Chy12g01221 Chy-Chr12:16937742 1.55E-83 dispersed
Chy12g01221 Chy-Chr12:16937742 Chy12g01223 Chy-Chr12:16949768 0 dispersed
Chy12g01224 Chy-Chr12:16986164 Chy12g01221 Chy-Chr12:16937742 6.48E-119 dispersed
Chy12g01219 Chy-Chr12:16919661 Chy12g01221 Chy-Chr12:16937742 1.47E-168 proximal
Chy12g01221 Chy-Chr12:16937742 Chy12g01222 Chy-Chr12:16943230 2.10E-175 tandem
Chy01g01713 Chy-Chr1:22930220 Chy12g01221 Chy-Chr12:16937742 1.83E-26 transposed
Chy02g02450 Chy-Chr2:28120739 Chy12g01221 Chy-Chr12:16937742 3.22E-112 transposed
Chy04g01977 Chy-Chr4:25639415 Chy12g01221 Chy-Chr12:16937742 2.02E-98 transposed
Chy11g01169 Chy-Chr11:17813436 Chy12g01221 Chy-Chr12:16937742 4.48E-76 transposed
Chy10g00836 Chy-Chr10:14284128 Chy12g01221 Chy-Chr12:16937742 3.88E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g856 . . . . . . . . . Cmo18g00169 . Cma11g00063 . . . . . Bhi02g00595 . . . . . . . . . . . . . . . . Cone19ag0174 Lsi02g00430 Csa01g00908 Chy12g01221 Cme12g01644 Blo13g00162 . . . . . . . . . Cmo11g00066 . . . . . . Bhi08g01677 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01221 Chy_Chr12 FPKM 39.035812 41.962154 3.090666 2.464792 11.212333 9.782367 10.682919 16.129639 15.864782 14.878724