Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01222 ATGCTCCTCAAACTAGGCCAAACTCCAACTCTAGTGGTTTCCTCACCAATAGTGGCTAGAGAAATTATGAAGACCCATGACCTTAAATTCTCCAATAGACCCAAAACCACAGCCCCAAATCTCATGTTCTATAGTTGCCAAGATGTGGGTTTTGCCCCATATGGTGATTATTGGAAAAAAGCCAAAAAAATGTGTGTTGTTGAGCTTTTTAGCCACAAAAGAGTTGAATCTTTTCAATATGTTAGAGATGAAGAAATTGATATACTTATTAATAAAGTTCATAAGGGAGCTAATTGTAGTGAGAGTTTGAATCTTACCCAATTATTGTTTCAAACCTCAAACGATATAGTGTCAAGATGTGTTCTGGGGAAGAAATTTGAGGATGAAAATGGGAAGAATGAATTTAGAGACTTGTACACAAGAAGAGTAATTGAGCTACTCTCGGCTTTTTGTGTGGGGGATTTCTTTCCTAATTTTGAATGGGTTGATGTTATTAGAGGATTGGTTGGAGAAATGAAAAAGGTTTCTAAGATAATTGATGGATTCTTTGATATGGTGATTGAAGATCACGTCATAAAGTTGAGATCAAGTGATAGATGTGATGATAAAAAGGATTTTGTGGATATCATGTTGCAGCAGCTCAATGATGAAGATTACACGTTTCATGACCATTTCACTAGAGACAACCTCAAAGGCATCTTAATGGACATGTTCATAGGAGGGACAGACTCAACAGCAACAATATTAGAATGGACAATGGCAGAGTTGTTAAGAAATCCAAACACCATGAAGAAAGTCCAACAAGAAATAAGAACAATAGTTGGAAAAAACAAGAAAAAAATTGAAATAAAGGACATTAACAAAATGGAGTACATGAAATGTGTAATAAAAGAATCTCTAAGATTACACCCACCAGTTCCTCTACTTGTACCTCGAGAAACAACAGACATGGTTGATATCGAAGGGTACCACGTGGGAGCAGGAACAAGTGTGCTTGTGAATGTTTGGGCAATTCAAAGAGACCCCAAAATATGGGAAAACCCAAACCAGTTCATCCCAGAGAGATTTATGGAGGAAAATAAATCAATTGATTTTAAAGGATCAGATTTTGAGTTGGTTCCATTTGGAAGTGGAAGAAGGAAATGCCCTGGAATAGGGTTTGGAATGGCTTCTTCTGAATGTGTGTTGGTCAATCTGTTGTATTGGTTTGATTGGAATATGGTTGAGGATATGAAAGGAGAATTGATGGATATGACTGAAGAAAATGGAAGCACTGTTCATAAGAAAATCCCTCTGTCTCATCCCATTACCGTATAA 1317 36.75 MLLKLGQTPTLVVSSPIVAREIMKTHDLKFSNRPKTTAPNLMFYSCQDVGFAPYGDYWKKAKKMCVVELFSHKRVESFQYVRDEEIDILINKVHKGANCSESLNLTQLLFQTSNDIVSRCVLGKKFEDENGKNEFRDLYTRRVIELLSAFCVGDFFPNFEWVDVIRGLVGEMKKVSKIIDGFFDMVIEDHVIKLRSSDRCDDKKDFVDIMLQQLNDEDYTFHDHFTRDNLKGILMDMFIGGTDSTATILEWTMAELLRNPNTMKKVQQEIRTIVGKNKKKIEIKDINKMEYMKCVIKESLRLHPPVPLLVPRETTDMVDIEGYHVGAGTSVLVNVWAIQRDPKIWENPNQFIPERFMEENKSIDFKGSDFELVPFGSGRRKCPGIGFGMASSECVLVNLLYWFDWNMVEDMKGELMDMTEENGSTVHKKIPLSHPITV* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16943230 16945650 + Chy12G218220.1 Chy12g01222 239003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01222 438 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 375 384 IPR017972 GO:0005506|GO:0016705
Chy12g01222 438 SUPERFAMILY Cytochrome P450 2 432 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01222 438 PRINTS P450 superfamily signature 240 257 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01222 438 PRINTS P450 superfamily signature 294 305 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01222 438 PRINTS P450 superfamily signature 373 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01222 438 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 1 433 - -
Chy12g01222 438 PANTHER CYTOCHROME P450 71B11-RELATED 1 433 - -
Chy12g01222 438 Gene3D Cytochrome P450 1 437 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01222 438 PRINTS E-class P450 group I signature 372 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01222 438 PRINTS E-class P450 group I signature 229 246 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01222 438 PRINTS E-class P450 group I signature 112 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01222 438 PRINTS E-class P450 group I signature 293 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01222 438 PRINTS E-class P450 group I signature 249 275 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01222 438 PRINTS E-class P450 group I signature 18 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01222 438 PRINTS E-class P450 group I signature 334 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01222 438 PRINTS E-class P450 group I signature 382 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01222 438 Pfam Cytochrome P450 3 423 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01222 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101207626 838.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01495 Chy-Chr3:17343298 Chy12g01222 Chy-Chr12:16943230 4.81E-10 dispersed
Chy12g01222 Chy-Chr12:16943230 Chy12g01228 Chy-Chr12:17006735 9.57E-169 dispersed
Chy12g01221 Chy-Chr12:16937742 Chy12g01222 Chy-Chr12:16943230 2.10E-175 tandem
Chy12g01222 Chy-Chr12:16943230 Chy12g01223 Chy-Chr12:16949768 1.12E-165 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g854 . . . Bda15g00533 . . . . . Cmo18g00168 Cma10g00089 . . . . . Cpe04g01587 Bhi02g00596 . . . . . . . . . . . . . . . . . Lsi02g00427 Csa01g00906 Chy12g01222 Cme12g01648 . . . . . . . . . Cmo10g00091 . . Cma18g00201 . . . . Bhi08g01673 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01222 Chy_Chr12 FPKM 4.479012 1.852735 0.0 0.0 0.0 0.0 0.0 0.0 0.891328 0.0