Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01223 ATGGATCCAACATCCTACAAAATTTTCCTCCAACTTGTGCAGTACTCTCCCTATGGAAACAACATTGACGTCAATAATCCCACCTCTTCTTCAGTACTATTCTTCCTCCCCTTCCTCTTCCTCTTCTTCCTACTTTCACTCAAATTCTTGTCCACCAAAAACCCCAAAACCAACAACTTACCACCATCACCACCACAACTCCCAATAATTGGCAACCTTCACCAACTCGGCAGCCTCCCACACCGCTCAGTGGCATCTCTTGCAGAGAAATATGGGCCTCTCATGCTCCTCAAACTAGGTCAAACCCCAACTCTTGTTGTCTCATCAACAAAACTAGCTAAAGAAGTAATGAAGTCCCATGATACCATCTGCTCAAACAGAGTCCAAAACACAGCTGCAAAGTCCATATTCTATGGATGTCATGATGTGGCCTTTGCTTCCTATGGAGAACATTGGAGACAGGCAAGAAAATTATGTGTTCTGGAGCTATTGAGTTCCAAAAGAGTTGAGTCTTTCCAACATGTTAGAGATGAAGAAGTTGCAAGGCTAGTGAAAAAGATTGAAAATTGTAATAAGGATAACCCATTATTGTGTGTGATCAATCTCAATGAGCTTTTGTTGTCAACTTCAAACAATATTGTGGGGAGATGTGTTTTGGGAGAGAAGTTTGTGGAAGAACATGATGGAAACTTCGGAGAAGTTACAAGAAAGGCTATGGTGCTTTTGGCTGAGTTTTGTGTTGGGGATGTTTTTCCTTGGCTTGGATGGATTGATGTTTTGAGAGGATTTCATGGTCAACTCAAAGCTTGTGTTGAAACATTGGATAAGCTTGTTGAGAAAGCGATTGAAGAACGTAGGGAAAAATTGAAGAGTGGTGATGATCTACCTTCTGAGAAGGATTTTGTAGGGGTTATGCTCAAATTGCAACAACAAGACGCACTTTATTATCATTTCACTATGGAAAATTTCAAAGCAATTTTACTGGATATGTTTGTAGCTGGAACAGACACAACAGCAGTAAGTTTGGAATGGTCAATGGCAGAACTGATGAGAAACCCAACAGCCATGAAAAAAGTTCAAGAAGAGGTCAGAACAATAGTTGGTAAAAAGACAAAGATTGAAACAAAAGACATTAAAAAAATGGAGTACATGAAATGTGTTATAAAAGAAACTTTAAGACTTCACCCACCAGGTCCTCTTTTGTTGCCAAGAGAAACAACGGGAAGTTTCAACCTTGAAGGCTACCAAATTCCACCAAAAACAAGGGTTTGGATCAATGCTTGGAAAATTCAAAGAGACCCCAAAATCTGGGAAAGCCCAAACCAGTTCGTTCCAGAGAGATTCATGGAGGAAAAGAAATCAGTTGATTTCAAAGGTCATGACTTTGAGTTCATTCCATTTGGGAGTGGAAGAAGGAAGTGCGTTGGATTGTCATTTGCTATTGCTTCTTTTGAACATGTATTGGCCAATCTTCTTTATTGGTTTGATTGGAACCTTCCATCTGGGGGGATGTTGGATATGACTGAACAACATGGTCTCGCTATTTCCAAGAAATTTTCACTCCATCTTATTCCAATTCCATATAGTGTGTAA 1593 39.86 MDPTSYKIFLQLVQYSPYGNNIDVNNPTSSSVLFFLPFLFLFFLLSLKFLSTKNPKTNNLPPSPPQLPIIGNLHQLGSLPHRSVASLAEKYGPLMLLKLGQTPTLVVSSTKLAKEVMKSHDTICSNRVQNTAAKSIFYGCHDVAFASYGEHWRQARKLCVLELLSSKRVESFQHVRDEEVARLVKKIENCNKDNPLLCVINLNELLLSTSNNIVGRCVLGEKFVEEHDGNFGEVTRKAMVLLAEFCVGDVFPWLGWIDVLRGFHGQLKACVETLDKLVEKAIEERREKLKSGDDLPSEKDFVGVMLKLQQQDALYYHFTMENFKAILLDMFVAGTDTTAVSLEWSMAELMRNPTAMKKVQEEVRTIVGKKTKIETKDIKKMEYMKCVIKETLRLHPPGPLLLPRETTGSFNLEGYQIPPKTRVWINAWKIQRDPKIWESPNQFVPERFMEEKKSVDFKGHDFEFIPFGSGRRKCVGLSFAIASFEHVLANLLYWFDWNLPSGGMLDMTEQHGLAISKKFSLHLIPIPYSV* 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16949768 16951562 + Chy12G218230.1 Chy12g01223 239004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01223 530 PRINTS P450 superfamily signature 333 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 PRINTS P450 superfamily signature 386 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 PRINTS P450 superfamily signature 474 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 PRINTS P450 superfamily signature 465 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 31 527 - -
Chy12g01223 530 SUPERFAMILY Cytochrome P450 61 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 Gene3D Cytochrome P450 46 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 Pfam Cytochrome P450 61 515 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 467 476 IPR017972 GO:0005506|GO:0016705
Chy12g01223 530 PRINTS E-class P450 group I signature 342 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 PRINTS E-class P450 group I signature 209 227 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 PRINTS E-class P450 group I signature 385 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 PRINTS E-class P450 group I signature 474 497 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 PRINTS E-class P450 group I signature 322 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 PRINTS E-class P450 group I signature 426 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 PRINTS E-class P450 group I signature 464 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy12g01223 530 PANTHER CYTOCHROME P450 71B11-RELATED 31 527 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01223 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101207378 971.459
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g02614 Chy12g01223 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01219 Chy-Chr12:16919661 Chy12g01223 Chy-Chr12:16949768 7.73E-156 dispersed
Chy12g01221 Chy-Chr12:16937742 Chy12g01223 Chy-Chr12:16949768 0 dispersed
Chy12g01223 Chy-Chr12:16949768 Chy12g01228 Chy-Chr12:17006735 0 dispersed
Chy12g01225 Chy-Chr12:16986777 Chy12g01223 Chy-Chr12:16949768 2.09E-133 dispersed
Chy12g01229 Chy-Chr12:17018279 Chy12g01223 Chy-Chr12:16949768 1.13E-92 dispersed
Chy12g01222 Chy-Chr12:16943230 Chy12g01223 Chy-Chr12:16949768 1.12E-165 tandem
Chy12g01223 Chy-Chr12:16949768 Chy12g01224 Chy-Chr12:16986164 3.62E-104 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g851 . . . Bda15g00535 . . . . Cmo13g00794 Cmo18g00165 . . . . . . . Bhi02g00597 . . . . . . Cla06g01705 . . . . . . . . . . Lsi02g00426 Csa01g00905 Chy12g01223 Cme12g01649 Blo13g00153 Blo15g00247 . . Bpe07g00863 . . . . Cmo10g00092 . Cma13g00766 . . . . . . . . . . . . Cla03g00297 . . . . . . . . Chy02g02614 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01223 Chy_Chr12 FPKM 2.145559 2.625027 3.216183 2.21545 2.00803 0.966406 2.075767 2.580917 2.62398 3.396768