Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01241 ATGAGGTTGTATGTTTATGTATTGGAGGCTAAGGACCTCCATGTGAAGGATTCGTTTGTGAAGCTTCGAGTTGGGAGGCGTAAGGCCAAGACGAGGATTATGAGGAATTGCTCTAATCCTGTTTGGAATGAGGAGTTTATTTTCAAGTTTCGTGATGTTGATGATGAACTAGTTGTGTCTGTTTATGAGCACAATGATGAATCTAATTTCTTTCATGCTTCATCGGGTTTGATTGGTCGTGTTCGGATACCCATATGGACTGTTGCTGCTGAGGATTCACAGACCTTGCCGCCCACTTGGTTTGATCTGCGAAGGTCCAAAACTGAGAAATTTATCGATGAAGTTGCTGGGAAAGTGCTTCTTATTGTCTCATTACATGGAAAAGGCAATGTAATCAATCAATCAAGTGTTACTAATACTAATACTAATCCTAAACCTTTAGATTTGGTTGGCGCCAAATCTTCATCCAGCAAGGCTGTTAAATGGAAGCCTAACAAGAAAACTATTGTGAGTCGTTTGGAGAGGTTGTTTCATAAGAGTGATGAGGACGCAAGAACAGATAATTCTTCAGAGTCATCAAGTGCCATGTCTGATACTGAAGAGCGCATTAATGGGCATCTGTCTGAATCTAGCTTTGATGAAGCTATTGAGACATTGCAGCTGAGGAGCAATGGAGAAGAAATGCCAGAAAATTTATCTGGCGGGGTTCTTGTGGATCAGGTGTATGTAGTTTCACCAGGTGATTTGAACAAGCTTCTCTTTTCGACAGGTTCACAGTTCAGGAGAGAACTAGCAGAGCATCAGGGAATAACAAATTTAGAAGAAGGAACTTGGTCTTGGAAACGAGGGGATGTACCTTGTCTTTCACGGATTGTATCTTACCGAAAACCTGCAACTAAGGTTGTTGGAGCTATTAATGCTACGGAGGAACAAACCTACGTTAAAGGGGATGGGTGGGAATTTGCTGTCTTGGTAAATGTAAGTACACCTGAGGTACCATTTGGTAATGCATTCAATGTTGAGTTACTCTACAAGATAATGCCTGGCCTTGAGTTAATTTCTGGAGAAGAGACTTCCCATTTTGTAGTTTCTTGGGGTATAAACTTCCTCCATAGTACAATGATGAAAGGCATGATTGAGAAAGGGGCTCGTCAGGGGCTGGAGGAAAATTTTGTCCAGTTCACTAATTTGCTGGCTCAGCATCTTAAAAGTCCGAATTCGACTGAGTTATTGAACAAAGGTCACGTGTTGTCAGCTTCTGAGAATAACCGCCAATCAAATTTTGAATTGGCCCGCCAATACTTCTGGAATTTCACTGTACTTTCTACCTTGTTCGTCTTGCTATACGTACTTGTGCACATCATTCTTTCTAAGCCTAAAACAACGCAAGGCTTGGAGTTCATTGGAATGGACTTGCCAGATAGTTTAGGAGAACTTGTTACTAGTGGAATTTTAGTCCTTCAGTTGGAACGTGTTTATAACATGGTCTCACATTTCATTCAAGCTAGGTTAAAAAGAGGAGGTGACCATGGAGTCAAAGGCCAAGGAGATGGATGGATCCTAACCATAGTTCTTTTAGAAGGAGTGAACATTTCATCCTTGGATTCTTCTGGATCCTCAGACCCTTGTGTGGTTTTCACATGCAATGGTAAAAAAAGAACTAGCTCTGTTGAGCTTCAAACTCATGAGCCTCAGTGGAATGAGATACTGGAGTTTGATGCCATGAAGGAACCACCATCAGTATTATACGTGGAGGTTTTCGACTTTGATGGTCCATTTGACCAGGCTGCTTCACTCGGGCATGCAGAGATTAATTTCCTAAAATATAAATCAACTGAACTTGCAGATATATGGGTTCCCCTTGAGGGGAAGCTTGCTCAATCTTCCCAGTCGAAGCTACACTTAAGAATCTTCTTAGAAAATACTGATGGAATTGAAACAATAAGACAATACTTGTCTATGAAGGGAAAGGAGGTTGGTAAGAAGCTGCATCCTAGGTCACCTTATAGGAACTCAACATTTCAAAAACTTTTCGGTTTGCCAGCAGAAGAGTTTCTTGTCAGCGACTTCACATGCTCCTTGAAAAGAAAAATGCTTCTTCAGGGGAGACTATTTCTATCTGCCAGAGTCATCGGGTTTTACGCCAATTTTTTTGGACAGAAAACGAAGTTTTTCTTTCTCTGGGAGGACATTGAAGATATACAAGTACTGCACCCCTCCCTTTCCTCTCTAGGTAGCCCATCATTAGTCATAATTCTTAAAAAAGGTCGAGGTCTTGAAGCAAGTCACGGTGCAAAGTCTCAAGATGAAGAGGGTAGACTAAGATTTTACCTCCAATCATTTGTCTCGTTCAATGTAGCCAGCAGGACGATTATAGGTATGTGGAGAACAAGGACATCGACCCTTGATCAGAAAGCACAGGTTGCTGAAATGTCAAATGATTCCGAAGAAAGGTCAGTTTTGGTGGAGGATATGGAATGTTTTTTGGATGTAGAAGATTCAAAGATGTCAAAGTTGTATGTTGCAGAACTTCCTATAAATATAAAATCATTGATGGAGTTCTTTGAGGGTGGCAAACTAGAACACAGGGTGATGGAAAAATCTGGTTGTCTAGACTATGCAACGACACCATGGAAATCCGTGAAACCCGGTCTCCTCGAAAGACACATTTCTTACCAATTCAATCACGATATTTCAATCTTTGAAGGCAAAGTCACATGCATTCAGCAAAAGTTTCCCATGACAGCAGCAAACACAGGCAATGGTGAAGAAGAATGGATAGTAAACGAGGTCATGAGCTTGCATGATGTACCGTTTGGCGAATGTTTTCGTATACATTTTAGGTACCGTTTTGAGGATTGTGAGCTAGCTAAAAATGCTTGCAAATGTGAGGCTTTCTATGGAATCACATGGCTTAAAAGCACGGAGCTTCAGCAGAAGATCACCCAGAACGTAGCTGATGAATTTGGACATAGACTAAAAGAGAAATTTGAACTAATGGAGAGGGAGATTCTTCTTGCAACCTAA 3027 41.13 MRLYVYVLEAKDLHVKDSFVKLRVGRRKAKTRIMRNCSNPVWNEEFIFKFRDVDDELVVSVYEHNDESNFFHASSGLIGRVRIPIWTVAAEDSQTLPPTWFDLRRSKTEKFIDEVAGKVLLIVSLHGKGNVINQSSVTNTNTNPKPLDLVGAKSSSSKAVKWKPNKKTIVSRLERLFHKSDEDARTDNSSESSSAMSDTEERINGHLSESSFDEAIETLQLRSNGEEMPENLSGGVLVDQVYVVSPGDLNKLLFSTGSQFRRELAEHQGITNLEEGTWSWKRGDVPCLSRIVSYRKPATKVVGAINATEEQTYVKGDGWEFAVLVNVSTPEVPFGNAFNVELLYKIMPGLELISGEETSHFVVSWGINFLHSTMMKGMIEKGARQGLEENFVQFTNLLAQHLKSPNSTELLNKGHVLSASENNRQSNFELARQYFWNFTVLSTLFVLLYVLVHIILSKPKTTQGLEFIGMDLPDSLGELVTSGILVLQLERVYNMVSHFIQARLKRGGDHGVKGQGDGWILTIVLLEGVNISSLDSSGSSDPCVVFTCNGKKRTSSVELQTHEPQWNEILEFDAMKEPPSVLYVEVFDFDGPFDQAASLGHAEINFLKYKSTELADIWVPLEGKLAQSSQSKLHLRIFLENTDGIETIRQYLSMKGKEVGKKLHPRSPYRNSTFQKLFGLPAEEFLVSDFTCSLKRKMLLQGRLFLSARVIGFYANFFGQKTKFFFLWEDIEDIQVLHPSLSSLGSPSLVIILKKGRGLEASHGAKSQDEEGRLRFYLQSFVSFNVASRTIIGMWRTRTSTLDQKAQVAEMSNDSEERSVLVEDMECFLDVEDSKMSKLYVAELPINIKSLMEFFEGGKLEHRVMEKSGCLDYATTPWKSVKPGLLERHISYQFNHDISIFEGKVTCIQQKFPMTAANTGNGEEEWIVNEVMSLHDVPFGECFRIHFRYRFEDCELAKNACKCEAFYGITWLKSTELQQKITQNVADEFGHRLKEKFELMEREILLAT* 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17070905 17075415 - Chy12G218410.1 Chy12g01241 239022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01241 1008 Gene3D - 670 797 IPR011993 -
Chy12g01241 1008 ProSiteProfiles C2 domain profile. 506 619 IPR000008 -
Chy12g01241 1008 CDD C2 521 621 - -
Chy12g01241 1008 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 1 1007 - -
Chy12g01241 1008 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 131 IPR035892 -
Chy12g01241 1008 MobiDBLite consensus disorder prediction 180 209 - -
Chy12g01241 1008 CDD C2 3 103 - -
Chy12g01241 1008 Gene3D C2 domain 1 126 IPR035892 -
Chy12g01241 1008 ProSiteProfiles VASt domain profile. 835 1008 IPR031968 -
Chy12g01241 1008 ProSiteProfiles VASt domain profile. 233 406 IPR031968 -
Chy12g01241 1008 SMART C2_3c 2 97 IPR000008 -
Chy12g01241 1008 SMART C2_3c 520 618 IPR000008 -
Chy12g01241 1008 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 519 643 IPR035892 -
Chy12g01241 1008 SMART gram2001c 672 738 IPR004182 -
Chy12g01241 1008 PANTHER BNAA05G37250D PROTEIN 1 1007 IPR044511 -
Chy12g01241 1008 Pfam C2 domain 2 103 IPR000008 -
Chy12g01241 1008 Pfam C2 domain 519 621 IPR000008 -
Chy12g01241 1008 Pfam GRAM domain 673 744 IPR004182 -
Chy12g01241 1008 Pfam VAD1 Analog of StAR-related lipid transfer domain 840 987 IPR031968 -
Chy12g01241 1008 Pfam VAD1 Analog of StAR-related lipid transfer domain 237 386 IPR031968 -
Chy12g01241 1008 Gene3D C2 domain 509 640 IPR035892 -
Chy12g01241 1008 ProSiteProfiles C2 domain profile. 1 101 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01241 - - - csv:101205709 1962.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00651 Chy-Chr12:9322608 Chy12g01241 Chy-Chr12:17070905 0 dispersed
Chy12g01241 Chy-Chr12:17070905 Chy12g01439 Chy-Chr12:18388118 7.13E-09 dispersed
Chy12g01241 Chy-Chr12:17070905 Chy02g02360 Chy-Chr2:27474784 2.38E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g818 . . . . . . . . . Cmo18g00151 . . . . . . . . . . . . . . . . . . . . . Cone2ag0931 . . . Lsi02g00412 Csa01g00881 Chy12g01241 Cme12g01664 . . . . . . . . . . . . Cma18g00190 . Car18g00182 Cpe09g01005 . Bhi08g01658 Tan05g1972 . . . . . Cla01g01329 Cam01g1399 Cec01g1431 Cco01g1492 Clacu01g1396 Cmu01g1304 Cre01g1237 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012076 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 4 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01241 Chy_Chr12 FPKM 0.839009 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0