Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01247 ATGGGATCAACAACAACAAGCAACCATTATTACAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGTAGGCTGTGTTTTTGCACCCTATTTTCCTCCTGAAGAACCCCAAAAATTTGTCAATGTCCACAAGGTGTTTGGAGCGAGTAACGTGGCGAAGCTCTTGAACGAAGTTCTTCCTCATCAACGACAAGATGCCGTCGTTTCGTTGGCCTACGAAGCTGAGGCAAGAATCAGAGATCCTGTTTATGGGTGTGTTGGAGCCATTTCTTTCCTTCAAAAACAGAAGCATTCACTTGTCATCTCCCCAGATGTAACAGCAGAAGGGCAGCCTGCATGA 348 45.11 MGSTTTSNHYYSPCAACKFLRRKCLVGCVFAPYFPPEEPQKFVNVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQKHSLVISPDVTAEGQPA* 116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17109983 17111755 + Chy12G218470.1 Chy12g01247 239028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01247 115 Pfam Lateral organ boundaries (LOB) domain 13 101 IPR004883 -
Chy12g01247 115 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Chy12g01247 115 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 6 102 - -
Chy12g01247 115 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 102 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02604 Chy12g01247 CCT
Chy02g02604 Chy12g01247 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00814 Chy-Chr5:11625989 Chy12g01247 Chy-Chr12:17109983 2.09E-47 dispersed
Chy12g00863 Chy-Chr12:13864557 Chy12g01247 Chy-Chr12:17109983 4.59E-35 dispersed
Chy12g01247 Chy-Chr12:17109983 Chy04g01052 Chy-Chr4:15572778 1.90E-32 dispersed
Chy12g01247 Chy-Chr12:17109983 Chy04g01431 Chy-Chr4:20958581 8.44E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18885 PF03195 LOB 8.90E-39 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01247 - - cit:102614340 178.718