Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01253 ATGTCATCAACAATGAGGGAAACATCTAGATTAGCTGAGGCCTCAATCAACGCTATCGTCCGACGGATGGTTAATCTTCCAAGAAGCATATTAGGAGGATTTTCAAGAGTTATGAATGGAGGAAGAAGAAACCAAACTTTGCCATCCAGTTACCAATATCAAATTCTGCAGCAGGACACACCGTATGTGCCGGAAGAATGGTCTTTCCTCACCAGTTTCCAATACCAGTATGGCTCGATGCACCCTTTTTTTTACGCCTGTCGATTTGCAGAAGCCCTGAAGATAGCAGAAGATGATCATAAGTTCTTATTCTTGTATCTGCACTCACCAGATCACACATTCACACCCTCTTTCTGCGAGAAGACATTGTGTTCAGAGCTAGTAGTGCAGTTTCTTGATGCTAATTTCATATGTTGGGGAGCACTTGCAAACAGAGGAGAAGGTCTACAGATGGCTACAACATTAGGAGCTACCAGTTTCCCATTCTGTGCCGTGATTGCTCCGGCTCCAGGTGAAAGCATAACAGTCCTACAACAGCTTGAAGGGCCACTTTCTCCAGCTGATTTGGTGGAGATTCTACAAAGAACAATGGAGGAACAGGGATCAGCTTTCGGTAGCTCCAAACTGAAGCGAGAAGAAAAGATAAGAGCAGATCGAAGGATAAGAGAAGAGCAAGACAGAGCATATCATGCGGCTCTTAAACAAGATAAGGAGAGGGAAAGACTTAAAAATCCACCTCTGGTGTTGCCTAAGAAAGCAATTGATGAGAGGCTCAAACAGAATTCTCCAATTAAACAACAAGGTAGAGTGAAAGAACCTACTTTTACTCGTGAAACTCCGAACAAGGATCCTGCAAATAAAGGAAAAGATTCTCATCCCAGCTCCCAGATACTAATAAGGTTTCCAAACGGTGAAAAGAGAGAGAGAAGGTTTTCAAGCATGGACAAGGTGAAATCAGTTTACAGTTATGTTGATTCGCTCGGCCTGCCTGGCACTGAAAACTATAGATTGATAGCAAGCTTCCCAAGAAGAGTATATGGTACCGATGAGATGAATATGACTCTGAAAGATGCTGGCCTTCACCCAAGAGCAAGTCTGTTTTTGGAGTGTCAATGA 1116 43.19 MSSTMRETSRLAEASINAIVRRMVNLPRSILGGFSRVMNGGRRNQTLPSSYQYQILQQDTPYVPEEWSFLTSFQYQYGSMHPFFYACRFAEALKIAEDDHKFLFLYLHSPDHTFTPSFCEKTLCSELVVQFLDANFICWGALANRGEGLQMATTLGATSFPFCAVIAPAPGESITVLQQLEGPLSPADLVEILQRTMEEQGSAFGSSKLKREEKIRADRRIREEQDRAYHAALKQDKERERLKNPPLVLPKKAIDERLKQNSPIKQQGRVKEPTFTRETPNKDPANKGKDSHPSSQILIRFPNGEKRERRFSSMDKVKSVYSYVDSLGLPGTENYRLIASFPRRVYGTDEMNMTLKDAGLHPRASLFLECQ* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17145849 17147513 + Chy12G218530.1 Chy12g01253 239034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01253 371 PANTHER FAS-ASSOCIATED PROTEIN 6 370 - -
Chy12g01253 371 Gene3D - 293 371 - -
Chy12g01253 371 ProSiteProfiles UBX domain profile. 290 368 IPR001012 GO:0005515
Chy12g01253 371 Pfam UBX domain 293 369 IPR001012 GO:0005515
Chy12g01253 371 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 6 370 - -
Chy12g01253 371 SUPERFAMILY Ubiquitin-like 288 369 IPR029071 -
Chy12g01253 371 SUPERFAMILY Thioredoxin-like 60 201 IPR036249 -
Chy12g01253 371 MobiDBLite consensus disorder prediction 232 296 - -
Chy12g01253 371 CDD UAS 89 199 - -
Chy12g01253 371 SMART 45neu3 68 194 IPR006577 -
Chy12g01253 371 MobiDBLite consensus disorder prediction 232 259 - -
Chy12g01253 371 Gene3D Glutaredoxin 65 203 - -
Chy12g01253 371 CDD UBX 297 369 - -
Chy12g01253 371 MobiDBLite consensus disorder prediction 271 289 - -
Chy12g01253 371 SMART ubx_3 287 370 IPR001012 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01253 K18726 FAF2, UBXD8; FAS-associated factor 2 - csv:101205471 722.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01938 Chy-Chr6:23293966 Chy12g01253 Chy-Chr12:17145849 1.89E-12 dispersed
Chy09g01319 Chy-Chr9:15111523 Chy12g01253 Chy-Chr12:17145849 1.35E-79 dispersed
Chy10g00075 Chy-Chr10:1770307 Chy12g01253 Chy-Chr12:17145849 7.07E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g788 Blo04g00728 . . . . . . . Cmo13g00906 . . . . . . Cpe20g00253 . . . . . . . . . . . . . . . Cone2ag0920 Cone16ag0087 . . Lsi02g00391 Csa01g00869 Chy12g01253 Cme12g01677 . . . . . Bpe15g00644 . . Sed02g1604 . . Cma13g00873 . Car13g00715 . . . Bhi08g01641 Tan05g1988 Cmetu09g0491 Lac10g0471 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013011 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01253 Chy_Chr12 FPKM 0.669329 0.722022 1.68656 0.99294 0.119816 0.0 0.805962 3.746856 3.057827 3.680275