Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01264 ATGCAGAGCTCTGCGTTCACCTTCTCCTCTTCTCTTCCTCTTCTCAAGCCTCGCCGGCCTCATACTTCCTCCTTCACTTCTCCCTCTAACTCAATTCGGTTATCTTCTTCGTCTTCTACAAATTCCAGAGATCTTGGAGACCTCAACAATGTTGGCATCCCTTCCTCTTGGCCCCGCCGATCTTGGACTCTCTCTTCATCTCCTTTTTCGTCATCCAAACTCCGGCCATGGAGTGGTGTACCCTCGCTTGCTTCGGATTCCGATGCGAGTCATTTCAAGGTTCAGGCTACTGCGGTGCCGGATAGCTCAGAAGAGTCTGCGAGTGATGGCGGAAGCTTAAGGAAAACGTTGGAGCTCGGGTTGTTGTTTGGCTTATGGTACCTTTTCAACATCTACTTTAACATCTTCAATAAACAGGTTCTCAAAGTGTATCCATTCCCTGTAACTGTCACCGGAGTTCAATTTGCTGTGGGCACTGTACTTGTTCTCCTTATGTGGGGACTTAATCTCTACAAAAAACCAAAGATTAGTGGTGCTCAGCTTGCTGCTATTCTGCCGTTGGCAATTGTTCACACATTGGGAAATCTTTTCACAAATATGAGTCTTGGGAAAGTGGCAGTATCGTTTACTCACACGATCAAAGCCATGGAGCCATTTTTTTCAGTTGTCCTGTCAGCAATGTTTCTTGGAGAGACTCCTACTCCATGGGTCATTTTATCCCTTCTGCCAATCGTTGGTGGTGTCGCATTGGCATCTGCCACTGAGGCCTCCTTCAACTGGGCCGGGTTTTCGAGCGCAATGGCATCTAATGTGACCAATCAATCTCGTAATGTTCTTAGCAAAAAGGTCATGGTGAAAAAAGAGGATTCAATGGACAACATCACCCTCTTTTCAATTATAACAGTCATGTCCTTTTTCTTACTAACCCCTGTGGCCATCTTCATGGAAGGTGTCAAGTTCACTCCTGCATACATTCAATCAGCTGGATTGAACATGAATCAACTATACACTAGGTCTCTTCTAGCTGCCCTTTGTTTCCATGCTTACCAACAGGTTTCTTACATGATATTGCAAAGAGTATCGCCCGTTACCCACTCAGTAGGAAACTGTGTAAAGCGTGTTGTGGTCATCGTGAGCTCCGTTATCTTCTTCCAAACTCCTGTTTCTCCAATCAACTCCATTGGCACTGGAATAGCTCTTGCTGGGGTTTTCCTCTATTCGAGGGTTAAGCGCATCAAAGCTAAGCCGAAGACAGCTTAA 1260 45.79 MQSSAFTFSSSLPLLKPRRPHTSSFTSPSNSIRLSSSSSTNSRDLGDLNNVGIPSSWPRRSWTLSSSPFSSSKLRPWSGVPSLASDSDASHFKVQATAVPDSSEESASDGGSLRKTLELGLLFGLWYLFNIYFNIFNKQVLKVYPFPVTVTGVQFAVGTVLVLLMWGLNLYKKPKISGAQLAAILPLAIVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVVLSAMFLGETPTPWVILSLLPIVGGVALASATEASFNWAGFSSAMASNVTNQSRNVLSKKVMVKKEDSMDNITLFSIITVMSFFLLTPVAIFMEGVKFTPAYIQSAGLNMNQLYTRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSIGTGIALAGVFLYSRVKRIKAKPKTA* 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17224495 17227668 + Chy12G218640.1 Chy12g01264 239045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01264 419 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 60 394 - -
Chy12g01264 419 Pfam Triose-phosphate Transporter family 118 407 IPR004853 -
Chy12g01264 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 162 252 - -
Chy12g01264 419 MobiDBLite consensus disorder prediction 1 58 - -
Chy12g01264 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 331 410 - -
Chy12g01264 419 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 117 417 IPR004696 GO:0016021|GO:0022857|GO:0055085
Chy12g01264 419 PANTHER SOLUTE CARRIER FAMILY 35 60 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00267 Chy-Chr6:1792692 Chy12g01264 Chy-Chr12:17224495 5.31E-74 dispersed
Chy10g01056 Chy-Chr10:15739628 Chy12g01264 Chy-Chr12:17224495 1.13E-57 dispersed
Chy12g01264 Chy-Chr12:17224495 Chy07g00647 Chy-Chr7:6197576 1.82E-20 dispersed
Chy12g01264 Chy-Chr12:17224495 Chy09g00348 Chy-Chr9:3036670 3.90E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01264 K15283 - csv:101203848 757.288