Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01267 ATGGCGTTTCTTCTTCTAATTGACAAGTGTACGACGAGTGGTTGGTCAAGTAAAGTTGAGGAGTTGTGGGTTAGGCAGCTGGGTGGTGAAGGTTCGGTGGTATTAATGGCTAGTCCGGGGAAAAACCTAAATCCTGAAATTTGTGGTTTAAAGGGATTGAATCAGGAACCTGATGACAAAAACCAGCTTGTTGACAAAGAAGCTGGCCTGAGTGGTGGTGAGAGGGATATGGCTCCGGTTACCGGGAATTCCATTCACAGGTCAGGTTCTCGTCCACAGCTAGACCTTAGCAAAGCAGAAATCCAGGGAAATTTTGAGGAGAGAGATCCCACGATTCTGTTGCCTAACCAATCTGATGATATATCTCACCTGGCTCTTGACATCGGCGGATCTCTCATCAAATTGGTGTACTTTTCTAGACATGAAGATCAATCGGTTGATGATAAGAGAAAGAGAAGCATTAAGCAGAGACTGGGATTATCAAACGGTAATAGAAGAAGTTATCCAGTTCTTGGCGGGAGGCTTCATTTTGTGAAGTTTGAGACAAGCAAGATTAATGAGTGTTTAGACTTCATCCATTCCAAGCAGCTACATCGTGGTGCTTGCAAAGATTTACCTCATTGGCATTCAGATGGCCCAGAAAATGAAAATGCCATCATTAAGGCTACAGGTGGAGGGGCATACAAGTTTGCAGATCTTTTTAAAGAAAGACTTGGAGTTAGCATTGATAAAGAAGATGAGATGGATTGTCTTGTGGCTGGAGCAAATTTTCTGCTAAAGGCAATACGTCATGAAGCTTTCACTCATATGGAGGGTAAAAAAGAGTTTGTGCAACTTGACCACAGCGAATTGTTTCCTTATCTGCTTGTTAACATTGGATCTGGCGTCAGCATGATCAAGGTTGATGGTGATGGGAAATTTCAGAGAGTTAGCGGGACAAATGTTGGAGGGGGCACTTACTGGGGCTTAGGAAGATTATTAACAAAATGTAATAGTTTTGATGAGTTGCTAGAGCTTAGTCAAAAGGGAGATAATAGCACAATTGACATGCTTGTTGGGGACATTTATGGTGGCATGGATTACTCTAAGATCGGTCTCTCTGCGTCAACAATTGCATCAAGTTTTGGCAAGACCATCTTAGTGAACAAGGAGCTTGAGGACTACAGACCCGAAGATATCTCATTGTCTCTCTTGCGAATGATCTCATATAACATTGGACAGATTTCGTACTTGAATGCTCTACGGTTTGGGCTTAAGAGAATATTTTTTGGAGGATTCTTTATCAGGGGACATGCCTATACCATGGATACAATTTCCTTCGCAGTTCACTTCTGGTCGAAAGGAGAAGCACAAGCAATGTTCTTGCGTCATGAGGGGTTCTTAGGAGCCTTAGGTGCATTCATGAGCTATGAAAAGCATGGTCTTGATGATCTATTGGCCCATCAGTTAGTTGAAAGGTTTCCCATGGGTGCACCATACACGGGAGGGAAAGTTCATGGGCCTCCACTTGGTGATTTGAATGAGAAGATTTCTTGGATGGAGAAATTCTTGCAGAAGAGAACAGAAATTACTGCACCTGTCCCTACGGCTCCCCCTGGAACTACTGGACTTGGAGGCTTTGAAGTCCCTTTATCCAAAGGAGAAACCTTGCGATCTGATGCAAGTGCCTTAAATGTCGGTGTACTCCATTTGGTTCCCACTTTGGAGGTGTTTCCACTGTTAGCTGATCCAAAGACATATGAGCCTAACACAATTGATCTCTCTGATCACAGTGAGTTGGAGTACTGGTTCACCGTGCTTTCAGAGCATGTACCGGACCTTGTTGATAAGGCTGTTGCAAGTGAAGGAGGGACTGATGATGCCAAGAGAAGGGGTGATGCATTTGCTCGGGCATTTTCTGCCCACTTGAGGAGGTTGATGGAGGAACCTACGGCATATGGAAAGTTGGGTTTGGCTAATCTTCTGGAACTGAGGGAAGAGTGCTTGAGGGAATTCCAATTTTTTGATGCCTATAGAAGCATAAAGCAGAGGGAAAATGAGGCATCACTTGCTGTATTGCCTGACCTGCTGTTGGAACTTGATAGTATGAATGAGGAAGCAAGACTGCTTACCCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGTTCTCGTGCTTGTGTTGATCTTTATCACAAGGGGACAATAATTGAGATTTACCGAATGAGTCGCAATAAGATGCAGAGGCCATGGCGGGTCGACGATTTTGATGCCTTCAGAGAGAGAATGTTAGGATCTGGGGATGTGAGACCCTCTCCACATAAAAGAGCTCTTCTCTTTGTGGACAACTCAGGTGCTGATGTTGTTCTAGGGATGCTTCCCTTGGCAAGGGAACTCCTCCGACGAGGAACAGAAGTTGTTTTAGTTGCAAACTCTCTTCCTGCCCTAAATGATGTAACCGCAATGGAGCTTCCTGACATTGTAGCTGAGGCTGCCAAGCACTGTGACATACTTCGTAGAGCTGCTGAAGCAGGGGGATTGATTGTGGATGCCATGATCGACTCTGCAGACGGTTCTAAAGAGGGATCATCTTTTGTTCCCTTGATGGTTGTTGAAAATGGGTGTGGTAGTCCATGTATAGATTTAAGACAAGTCAGCTCTGAGTTGGCTGCTGCAGCTAAAGACGCTGATTTGGTAATCTTGGAAGGGATGGGGAGAGCTCTTCACACAAACTTCAATGCCCAATTTAAATGTGATGCTTTGAAGCAACGGTTGGCAACCCTCCGGCTCCGACGACTTCGCGCACTCGCCACCGAGTTCATACTCACGCCCTCTTCTCGAGTTTCGTCTCTAACAACCTCGATCACCTCAGACCACGCGCGGGAACTTCAAGCTTTGATGACCCATCTTTGCGCGACCTCACCCACGAGCAGTAGCGAAGACCACAAACCCCGGCGACTTTTCGCTGCGCACCGCACCGATACGTTCGGCATATTTTTTATGACTGTTACACTAGTGAAAATGGGTTCTCCAATCGAGGAGGAGGCGATCAATCCATTAACAGATGAAATTAAGGATTCTGGTGTCGAAAACTTTGATGATGGGAGCAAAGAGATGTTTGAAAAGAGGTCTGAGACACGAGAGCGGAAGAAGAGCAAGTACTTGTCTTTTCCGTATATAAACTGGGGACGGAAAGTTATGCCAGCTGAAACGGAAGATATTAAATTTCTTAAAATTTCTGGTGAAGGCGAGGATGAAAATGCAGTTGAGGGCCAGAATGAAACCCCATCGCTTTCTAAATGCAGTAGCAGGTTCTGGAAGAAGTGGTACAGGAATATCACCAGTGGTAGTGATGTCCCTGATAATCAAGACTTGATGAGTGCATCACCAGCGGAGTTTCTCTCTGAGCTTCACTTTACTGCAGTAAATTGTCTTTATCCAAATGAAAACAACAACTTTGATGCAGTTGCTCAGTTCTTCTCCAGATTTAGAATTTTAATGTTTCATGATGAATCTGTCAATGGTGGTCAAAATGAGGCAATGGTTGCGGATTTATTTTTTCTTGGGGGAAAGGTGTCAGAGGTTAAGCATCCTTCGTCGGCTGTTAAATCTGGGATCAAGAAAAGGAAAAATCAGGCAAGTTCTATTATGAAAATGGAAGATACGAAATCCAAACAAGTCTCTGGTGATGTGGATTTGACTGGAAAAGCTGAAACAAGTCCTGCAGGAGATGCCGACGAAGAAAGCCCTCCGTCTTCCAATGTTAAATCAGACAAAGATAGAGAAAGCTTGTGTAGAGAATTCGTTGATAATCAAGACTTGATGAGTGGATCGCCAGCTGAGTTTCTCTCTGAGCTTCATTTTACTGCTGTAGATTGTCTTTATCCAAATGAAAACAACAACTTTGGCACAGTTGCTCAGTTCTTCTCCATATTTAGAATTTTAACGTTTTTGGGTGAAAAGGTGTCAGAGGATAAGCAGCAGCAGCAGCCTTCTTCGGCTGCAAAATCCGGGATCAGGAAAAGAAGAAGTCAGGCAAGTTCTGTTAAGAAAATGGAAGAGATGAAATCCAAACCAGTGTCTGGTGATGTGGATTTGACTGGAAATGCTGAAATAAGTCCTGCAGGAGATGCACAGAAAAAAACCCCTTCGACTTCCAAGGTTAAATCAAAAAAAGATAAAGAGAGCTTGGGGAGATTGAAGACTAAGTCCCTTTCTGCCTTGTCAGATGTGAACATAACCCTTTCTTCCTGTAGCTTACTCGCAAAAGATTCACCTGAGGCTGGACCCCTCTCACCCAATGGTTTACCGAAGCGAAGGAAGAGAAGGAGCAATGGAGCACATCCCCAGAGTAAACCAACAACTGAGATACCAGATTTAAATGGAAGTGGTACCGTAGCTGGCTTGTTGGTTGAAGATCAGCAGGCTGTGAGCCATGTTGCTTCCCAGCTAAAGCGTGAGCCAAAAAGGAGAAGGAAACGTGGAGTTTCTAAGGAGAATTCAAAGGCGTCTACTGAATTCATAAATGTAAATGTGAATGACAGCAATAAACCTGGTTCGTTTTTCATTGATCTACAGGTTACAGCTTCACAACCATTTGCTGTAATTCCAGAACAAAATAATTTGGATTTTGCAGGAGCGCCTAACCAGTCGGTGAAAGATCAGACCATTGGCCAGGATCAGAGCAAATCTGGGGGCAAAAAGCGAAAGAGGAAGGAGAAACCACCCTTGGCAGATCCAGATGCTGTTTTATCTTATTCCAATGGAATGGGTACTGACACCAGTCAAGGGAAAGATTCCCAGTTGACTAACAACCGTCCGCAGCCTAAACCTAAAAGGAGGAGGAGGAGAAAAGGTCAAGCTAGTTTGAACCATCCAAATCCTTCTGACAGCAGATCATATATCTATAATAGAGTTGAAACTGATGGTGAAGGTTTAGGATCTCTTCTTCTCTTGACTTTCTCTTCAGAAGCTCCCTTGCCTCCGCGGGAGCAAGTTATTACTACGTTTAGCCAGTTTGGATCATTGAAGGAATCAGAGATACAGTTGAAAGATTCAACTGTAGAGATAGTTTTCCTCCGAAGCGCCGATGCTATGGAAGCCGTTCGGAGTTTAAAGAAGAACAACATTTTTGGCCCAACTCTTTTAAAATATCAGCTCTATCATCTCTCAGCTCCCCCCAAGACGTCAGACTCGGACAGGGCTTGCACAGCACTGGCCTATCCGGCTTCTGAGGGCACTCTGAACCCATCAAAGTCTGCTGAATCAGGAAATCAAGCAGGTGATGCACCACCTATAGAGTTCATAAGGAAAAATCTTCAGATGATGACATCAATGCTTGAGAAGTCAGGAGACAATCTCTCCCCAGACATGAGAGCCAAATTGGAGTGCGATATTGAAGGCCTCCTGAAGAAGGTGAGTTCCATGGCGGGGCCTTCCTCAACGTAA 5433 44.36 MAFLLLIDKCTTSGWSSKVEELWVRQLGGEGSVVLMASPGKNLNPEICGLKGLNQEPDDKNQLVDKEAGLSGGERDMAPVTGNSIHRSGSRPQLDLSKAEIQGNFEERDPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSVDDKRKRSIKQRLGLSNGNRRSYPVLGGRLHFVKFETSKINECLDFIHSKQLHRGACKDLPHWHSDGPENENAIIKATGGGAYKFADLFKERLGVSIDKEDEMDCLVAGANFLLKAIRHEAFTHMEGKKEFVQLDHSELFPYLLVNIGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCNSFDELLELSQKGDNSTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTILVNKELEDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLLAHQLVERFPMGAPYTGGKVHGPPLGDLNEKISWMEKFLQKRTEITAPVPTAPPGTTGLGGFEVPLSKGETLRSDASALNVGVLHLVPTLEVFPLLADPKTYEPNTIDLSDHSELEYWFTVLSEHVPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLRRLMEEPTAYGKLGLANLLELREECLREFQFFDAYRSIKQRENEASLAVLPDLLLELDSMNEEARLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDAFRERMLGSGDVRPSPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLIVDAMIDSADGSKEGSSFVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVILEGMGRALHTNFNAQFKCDALKQRLATLRLRRLRALATEFILTPSSRVSSLTTSITSDHARELQALMTHLCATSPTSSSEDHKPRRLFAAHRTDTFGIFFMTVTLVKMGSPIEEEAINPLTDEIKDSGVENFDDGSKEMFEKRSETRERKKSKYLSFPYINWGRKVMPAETEDIKFLKISGEGEDENAVEGQNETPSLSKCSSRFWKKWYRNITSGSDVPDNQDLMSASPAEFLSELHFTAVNCLYPNENNNFDAVAQFFSRFRILMFHDESVNGGQNEAMVADLFFLGGKVSEVKHPSSAVKSGIKKRKNQASSIMKMEDTKSKQVSGDVDLTGKAETSPAGDADEESPPSSNVKSDKDRESLCREFVDNQDLMSGSPAEFLSELHFTAVDCLYPNENNNFGTVAQFFSIFRILTFLGEKVSEDKQQQQPSSAAKSGIRKRRSQASSVKKMEEMKSKPVSGDVDLTGNAEISPAGDAQKKTPSTSKVKSKKDKESLGRLKTKSLSALSDVNITLSSCSLLAKDSPEAGPLSPNGLPKRRKRRSNGAHPQSKPTTEIPDLNGSGTVAGLLVEDQQAVSHVASQLKREPKRRRKRGVSKENSKASTEFINVNVNDSNKPGSFFIDLQVTASQPFAVIPEQNNLDFAGAPNQSVKDQTIGQDQSKSGGKKRKRKEKPPLADPDAVLSYSNGMGTDTSQGKDSQLTNNRPQPKPKRRRRRKGQASLNHPNPSDSRSYIYNRVETDGEGLGSLLLLTFSSEAPLPPREQVITTFSQFGSLKESEIQLKDSTVEIVFLRSADAMEAVRSLKKNNIFGPTLLKYQLYHLSAPPKTSDSDRACTALAYPASEGTLNPSKSAESGNQAGDAPPIEFIRKNLQMMTSMLEKSGDNLSPDMRAKLECDIEGLLKKVSSMAGPSST* 1811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17252612 17269636 + Chy12G218670.1 Chy12g01267 239048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01267 1810 PANTHER PANTOTHENATE KINASE 67 867 IPR004567 GO:0004594|GO:0005524|GO:0015937
Chy12g01267 1810 MobiDBLite consensus disorder prediction 1200 1217 - -
Chy12g01267 1810 MobiDBLite consensus disorder prediction 1539 1557 - -
Chy12g01267 1810 MobiDBLite consensus disorder prediction 1194 1257 - -
Chy12g01267 1810 PANTHER PANTOTHENATE KINASE 2 67 867 - -
Chy12g01267 1810 SUPERFAMILY AF1104-like 561 917 IPR036075 -
Chy12g01267 1810 MobiDBLite consensus disorder prediction 1474 1497 - -
Chy12g01267 1810 Pfam Damage-control phosphatase ARMT1-like domain 653 925 IPR002791 -
Chy12g01267 1810 MobiDBLite consensus disorder prediction 1539 1629 - -
Chy12g01267 1810 MobiDBLite consensus disorder prediction 1582 1602 - -
Chy12g01267 1810 TIGRFAM panK_eukar: pantothenate kinase 123 469 IPR004567 GO:0004594|GO:0005524|GO:0015937
Chy12g01267 1810 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 747 925 - -
Chy12g01267 1810 Gene3D - 346 459 - -
Chy12g01267 1810 MobiDBLite consensus disorder prediction 1341 1355 - -
Chy12g01267 1810 Gene3D - 583 667 IPR035073 -
Chy12g01267 1810 MobiDBLite consensus disorder prediction 1418 1459 - -
Chy12g01267 1810 MobiDBLite consensus disorder prediction 1318 1337 - -
Chy12g01267 1810 SUPERFAMILY Actin-like ATPase domain 121 265 IPR043129 -
Chy12g01267 1810 Gene3D - 115 278 - -
Chy12g01267 1810 MobiDBLite consensus disorder prediction 1379 1393 - -
Chy12g01267 1810 SUPERFAMILY Actin-like ATPase domain 237 470 IPR043129 -
Chy12g01267 1810 MobiDBLite consensus disorder prediction 1318 1393 - -
Chy12g01267 1810 MobiDBLite consensus disorder prediction 71 93 - -
Chy12g01267 1810 Pfam Fumble 123 468 IPR004567 GO:0004594|GO:0005524|GO:0015937
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01267 K24265 PANK4; bifunctional damage-control phosphatase, subfamily II, fusion protein - csv:101203117 1690.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00186 Chy-Chr8:4396029 Chy12g01267 Chy-Chr12:17252612 4.69E-19 dispersed
Chy01g00572 Chy-Chr1:4103705 Chy12g01267 Chy-Chr12:17252612 1.19E-52 transposed
Chy10g00902 Chy-Chr10:14727631 Chy12g01267 Chy-Chr12:17252612 6.17E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g757 Blo04g00734 . . . . . . . . Cmo18g00128 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0101 Cone13ag0142 . Lsi02g00371 Csa01g00852 Chy12g01267 Cme12g01694 . . . Bda14g00811 . Bpe15g00638 Bma03g00781 . . . . . Cma18g00170 . Car18g00161 Cpe09g01025 . Bhi08g01609 Tan05g2008 . Lac10g0449 Hepe07g2227 . . Cla01g01300 Cam01g1429 Cec01g1464 Cco01g1460 Clacu01g1366 Cmu01g1272 Cre01g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005817 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01267 Chy_Chr12 FPKM 0.0 0.0 1.94224 0.0 0.0 1.089072 0.0 0.0 1.206309 0.0