Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01272 ATGAGGAATTTAAACTGGTTTAAGCCAATTTCGATTAATGGGAAGCCTGGGAGGAGGCTTTCACTTGGAGAGTACCAACGGGCTGTGTCGTGGTCTAAGTATTTGGTGTCTTCAGGAGCTGAGATAAAGGGAGAAGGAGAAGAGGAATGGAGTGCTGACATGTCCCAGTTGTTCATTGGCTTCAAATTTGCTACTGGAAGGCATAGTAGGATTTACAGAGGTGTCTATAAGCAAAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGACGAAAACTTGGCTAATTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGATTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAACCTCCAGTGTTTTGTATTATCACGGAGTATATGACAGGTGGTTCGTTAAGAAAATATCTCCATCAACAAGAGCCACATTCCGTCCCGCTGAACTTGGTTTTGAAACTAGCTCTCGACATCTCACGTGGGATGCAGTACCTTCATTCTCAGGGAATACTTCACAGAGATCTTAAATCAGAAAATCTCTTACTCGGTGAAGATATGTGTGTTAAGGTAGCAGATTTCGGTATCTCGTGCTTAGAATCTCAATGCGGAAGTGCAAAGGGATTCACCGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACACCACACTAAGAAAGTTGATGTCTATAGCTTTGGCATTGTCTTGTGGGAGCTCTTAACTGCATTGACACCATTTGATAACTTGACTCCCGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCTCTGCCTTCCGCGTGCCCACAGGCATTTCGTCATCTGATTAAGAGATGCTGGTCGAAAAAACCGGACAAGCGACCGCATTTTGACGAGATCGTTTCAATTTTGGAAACTTATGTGGAGTCTTACAATGAAGATCCAGAATTTTTTTGTCATTATGTCCCCTCATCTAGCAGATACACTGCTTGGAAATGCTTATCAAAATGTATTACCAAACAATCATCTGCTTCCTTGAAGCCTAGGAATTCTACATCCTCTTGA 1086 43.0 MRNLNWFKPISINGKPGRRLSLGEYQRAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMTGGSLRKYLHQQEPHSVPLNLVLKLALDISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNLTPEQAAFAVCQKNARPPLPSACPQAFRHLIKRCWSKKPDKRPHFDEIVSILETYVESYNEDPEFFCHYVPSSSRYTAWKCLSKCITKQSSASLKPRNSTSS* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17302183 17304319 - Chy12G218720.1 Chy12g01272 239053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01272 361 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01272 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Chy12g01272 361 Gene3D Transferase(Phosphotransferase) domain 1 140 347 - -
Chy12g01272 361 CDD STKc_MAP3K-like 66 311 - -
Chy12g01272 361 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 333 - -
Chy12g01272 361 PANTHER SERINE-THREONINE PROTEIN KINASE 1 333 - -
Chy12g01272 361 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
Chy12g01272 361 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01272 361 Pfam Protein tyrosine and serine/threonine kinase 62 311 IPR001245 GO:0004672|GO:0006468
Chy12g01272 361 SUPERFAMILY Protein kinase-like (PK-like) 46 311 IPR011009 -
Chy12g01272 361 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Chy12g01272 361 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Chy12g01272 361 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Chy12g01272 361 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Chy12g01272 361 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00294 Chy-Chr2:1918726 Chy12g01272 Chy-Chr12:17302183 2.24E-118 dispersed
Chy12g00928 Chy-Chr12:14655762 Chy12g01272 Chy-Chr12:17302183 5.98E-107 dispersed
Chy01g00653 Chy-Chr1:4649398 Chy12g01272 Chy-Chr12:17302183 4.51E-79 transposed
Chy02g00436 Chy-Chr2:2755036 Chy12g01272 Chy-Chr12:17302183 1.51E-140 transposed
Chy04g00388 Chy-Chr4:3429929 Chy12g01272 Chy-Chr12:17302183 4.83E-79 transposed
Chy04g01673 Chy-Chr4:23112345 Chy12g01272 Chy-Chr12:17302183 2.66E-40 transposed
Chy05g00823 Chy-Chr5:11816512 Chy12g01272 Chy-Chr12:17302183 3.42E-100 transposed
Chy06g02262 Chy-Chr6:26614440 Chy12g01272 Chy-Chr12:17302183 2.15E-80 transposed
Chy11g01377 Chy-Chr11:20090311 Chy12g01272 Chy-Chr12:17302183 4.72E-37 transposed
Chy12g01272 Chy-Chr12:17302183 Chy04g01464 Chy-Chr4:21251658 1.98E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71639 PF07714 PK_Tyr_Ser-Thr 1.70E-65 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01272 - - csv:101222762 739.184