Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01273 ATGGGGTTTTCACTTCTTCAGTATTTTGGAAATTTTCAGAATAATTGTGACCATCAATTGGAGAAGGTTGATTATACCTCCGTGTTTGCTTTTCGCCTTCTGTTGTTCATAGATAATGCACTTTCAGCCGGAATGGGATTAGATTTTGGATGGCAGCAGCGGTATGCTCGGTTTTGTGGAAGAGTCGTGGTTCTTTCTATCCTGTCTCTATTGCTCTACCCGTTTCTATGTGCGTGGACTGTGATTGGTACCCTGTGGTTTAGAGATGCTAAGGACTGTTTGCCTGAAGAGGGACAGAAATGGGGTTTCCTTATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTTGGAAAGTGGTTAGCGCGTAGACAAGCACACTTGTTCCGTGCCCAACAAGGCATACCGGTATCAGAATATGGGGTTCTAGTTGATATGATTAGAGTTCCTGATTGGGCATATGAAGCTGCAGGACTGGAAACACGAGCCATTGGCCAAGATGCTACTGGGTATCATCCCGGACTGTTCTTAACCTCAGCTCAGCGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTTAGGCTGAAGGCTGTCCCAACTGATTGCAGTGAATGTCCTATTTGCCTTGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGTATGCCATGTGCTCACAATTTCCACGTTGAATGTATCGACGAATGGCTTCGTCTGAATGTCAAATGTCCTCGATGCCGCTCCTCCGTCTTCCCAAATCTCGACCTCAGCGCTCTTTCTAACCTGCATTCAGACACAGAACAAACATCTCACAATGCTTTTGTAACAACCCAACCTTCAAGTCTATCGAGATCAACTCCAACCCACGCAGCTCATACCGAAAACACAGCAAGTCTCCAAACTGATACTGCCTTAGATGCTTTGGAAAATGGAAACTCACCCATGCCATCTGCTTCTCCTCATTGA 984 46.04 MGFSLLQYFGNFQNNCDHQLEKVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLFRAQQGIPVSEYGVLVDMIRVPDWAYEAAGLETRAIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSHNAFVTTQPSSLSRSTPTHAAHTENTASLQTDTALDALENGNSPMPSASPH* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17310095 17312848 - Chy12G218730.1 Chy12g01273 239054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01273 327 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Chy12g01273 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 16 317 - -
Chy12g01273 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 16 317 IPR044793 GO:0004842|GO:0010182
Chy12g01273 327 SMART ring_2 212 252 IPR001841 -
Chy12g01273 327 SUPERFAMILY RING/U-box 193 261 - -
Chy12g01273 327 Pfam Ring finger domain 211 253 IPR001841 -
Chy12g01273 327 MobiDBLite consensus disorder prediction 274 305 - -
Chy12g01273 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 258 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02573 Chy12g01273 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01273 Chy-Chr12:17310095 Chy06g02293 Chy-Chr6:26825190 2.30E-14 dispersed
Chy12g01273 Chy-Chr12:17310095 Chy02g02573 Chy-Chr2:28940268 2.26E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01273 K16284 - csv:101222360 617.461