Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01292 ATGAAGAAGACGACCGGTAAGAAGAGGCGTCTTCAAAAACCAGAACCACCGGCCAATTCTCACTCCGATAGACCCCAAGCTAAATCAATCAGAACTGTTATTGGCTTCAATTGTTCGACTATTGACCCGTATCCAGCTCATTCTTCGCCCACTTCGGACGAATGTCTGTCCGTGAGGGATGATCTGTTGAATCTTCATGGCTTCCCGCGAGAGTTTCTTAAGTATCGGAAGGAGCGAGAGAGGCTGAGCGAGTGCTGCTCTGTCGTGGACGGCGTCCGCGCTGAGCACCGGGATAATGTGGAGTCGGAGTTCGTCGATGAGAAGGAGAGCGTTTTGGATGGATTGGTGAAAACTGTGCTATCGCAGAACACTACGGAGGCTAATTCCGAAAGGGCTTTTGCTTCTCTCAAGTCCGCCTTTGATACTTGGGAGGATGTTCTTTCAGCTGAATCCAAATGCATAGAGGATGCCATAAGATGTGGAGGATTAGCACCTACAAAAGCCTCTTGCATAAAAAATATATTGAGTTCTCTGTCAAAGAGAAGAGGCAAATTATGCTTGGAGTTCTTGCGCGATTTATCCATCGATGAAATAAAGGCAGAGCTGTCGACTTTCAAAGGAATTGGCCCCAAAACGGTGGCCTGTGTCCTGATGTTCAATCTTCAGAAAGATGATTTTCCAGTAGACACTCATGTATTTCAGATTGCAAAGTTTGTGGGTTGGGTCCCGGATGACGCAGACAGGAACAAAACGTATCTTCATCTCAACAAAAGGATCCCAAATCATCTCAAGTTTGATCTCAACTGCCTTCTTTATACTCATGGAAAGCTCTGTTCGAAATGTACGAAGAAAACAGGCACCCGACAGCGAAGGGGATCTGAAGAACAATCTTGTCCTTTGTTCAAGTACTCCTATAACCCATAA 924 45.89 MKKTTGKKRRLQKPEPPANSHSDRPQAKSIRTVIGFNCSTIDPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKERERLSECCSVVDGVRAEHRDNVESEFVDEKESVLDGLVKTVLSQNTTEANSERAFASLKSAFDTWEDVLSAESKCIEDAIRCGGLAPTKASCIKNILSSLSKRRGKLCLEFLRDLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFQIAKFVGWVPDDADRNKTYLHLNKRIPNHLKFDLNCLLYTHGKLCSKCTKKTGTRQRRGSEEQSCPLFKYSYNP* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17392060 17394137 - Chy12G218920.1 Chy12g01292 239073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01292 307 Pfam HhH-GPD superfamily base excision DNA repair protein 116 260 IPR003265 GO:0006284
Chy12g01292 307 Gene3D - 228 278 IPR023170 -
Chy12g01292 307 CDD ENDO3c 115 275 IPR003265 GO:0006284
Chy12g01292 307 MobiDBLite consensus disorder prediction 1 27 - -
Chy12g01292 307 Gene3D Hypothetical protein; domain 2 107 227 - -
Chy12g01292 307 PANTHER - 7 304 - -
Chy12g01292 307 SUPERFAMILY DNA-glycosylase 92 284 IPR011257 GO:0003824|GO:0006281
Chy12g01292 307 SMART endo3end 120 277 IPR003265 GO:0006284
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01292 K10773 NTH; endonuclease III [EC:4.2.99.18] - csv:101219928 612.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00766 Chy-Chr3:10340540 Chy12g01292 Chy-Chr12:17392060 6.75E-09 dispersed
Chy10g01260 Chy-Chr10:17147486 Chy12g01292 Chy-Chr12:17392060 3.01E-14 dispersed
Chy11g00880 Chy-Chr11:12233696 Chy12g01292 Chy-Chr12:17392060 9.82E-13 dispersed
Chy12g01292 Chy-Chr12:17392060 Chy04g01972 Chy-Chr4:25596062 1.70E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g691 . Blo16g00212 . . . Bpe13g00260 Bma06g00201 . . Cmo18g00115 . . . . . . . . . . . . . . . . . . . . . Cone2ag0882 . . . Lsi02g00350 Csa01g00825 Chy12g01292 Cme12g01718 . . . . . . . . Sed08g2536 . . . Cma18g00147 . Car18g00142 Cpe09g01044 . Bhi08g01456 Tan05g2039 Cmetu12g1964 Lac10g0422 Hepe07g2249 . . Cla01g01395 Cam01g1456 Cec01g1492 . Clacu01g1480 Cmu01g1375 Cre01g1291 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011007 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01292 Chy_Chr12 FPKM 5.910223 6.774239 7.040757 8.863224 7.860066 7.228823 9.478704 24.459858 23.946329 25.861448