Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01298 ATGGCGGCTCTGCCATCCTCTTCCGCTTTACCGGATTCTGCTTCCTCCAGACATCATACTTACAGTAGAAAGCAGAAATCCCTTGGTCTTTTATGCTCAAAGTATGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTCTGGAGAGCGTTGGGGTTCTATCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCTTTACAAGATCTCAAAGAAGAGGGATTGAGGGAGAATTGCAGCGCATCTGATGGTAACGATTATGCAAAAGTCTCGGATGATGAAGATGAGGATGAAAGATTTTCTAATCCAACTGGAAGCCAGACCTCAACTGCAGCTGTGCCAAAATCATCTTCATCATCGTTAAAAGCTGACAATAGAAGGGAGAAGTCATTGGCGCTCCTGACACAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGACGAAGCTGCTAAGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACTAAGGTAAGGCGGCTATACGACATTGCAAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACTCATACAACGGACACGAGAAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCAACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAATTCTGCCTATCAGGGTTTTAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGTGATAATTCTTCACAAGAGGATAGCCAGAACAGTCAGGATCAAGAATGTGAAAGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTATCAGTAGCTAAAGTTGGTGTCTTGGACAATAAAAATGTGAAGCGGACTCACGACTGGGAAAGCCTTTCCTCAACATTCCGTCCCCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTTTCTGGATGCAATTCTTGTGAAAGTAAATGATTACAAAGAAAACTTCCAAATCAGAGAAGTTGGCTTATCGATTCTGGATGATCTTCTGGACATTAAATTTTGGAGAAATCAAGGGAAAATTATGGCAGTGGTTAGTGGAATGATTCTCCTGATATCACTCGTGTTAACTGTCGATTTAAACTTTTAA 1233 41.77 MAALPSSSALPDSASSRHHTYSRKQKSLGLLCSKYGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAENSAYQGFNHCLNMQKLVQCDNSSQEDSQNSQDQECERTSKSYQFGPFAPVSVAKVGVLDNKNVKRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWFLDAILVKVNDYKENFQIREVGLSILDDLLDIKFWRNQGKIMAVVSGMILLISLVLTVDLNF* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17432697 17436124 - Chy12G218980.1 Chy12g01298 239079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01298 410 SUPERFAMILY Winged helix DNA-binding domain 32 68 IPR036390 -
Chy12g01298 410 Pfam E2F/DP family winged-helix DNA-binding domain 32 67 IPR003316 GO:0005667|GO:0006355
Chy12g01298 410 Pfam E2F/DP family winged-helix DNA-binding domain 136 214 IPR003316 GO:0005667|GO:0006355
Chy12g01298 410 Gene3D - 129 216 IPR036388 -
Chy12g01298 410 Gene3D - 33 70 IPR036388 -
Chy12g01298 410 SMART E2F_TDP_2 134 214 IPR003316 GO:0005667|GO:0006355
Chy12g01298 410 SMART E2F_TDP_2 23 67 IPR003316 GO:0005667|GO:0006355
Chy12g01298 410 MobiDBLite consensus disorder prediction 1 21 - -
Chy12g01298 410 MobiDBLite consensus disorder prediction 1 16 - -
Chy12g01298 410 SUPERFAMILY Winged helix DNA-binding domain 136 215 IPR036390 -
Chy12g01298 410 MobiDBLite consensus disorder prediction 85 132 - -
Chy12g01298 410 PANTHER TRANSCRIPTION FACTOR E2F 7 352 IPR015633 GO:0000978|GO:0006357
Chy12g01298 410 MobiDBLite consensus disorder prediction 110 128 - -
Chy12g01298 410 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 7 352 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02548 Chy12g01298 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01298 Chy-Chr12:17432697 Chy08g00971 Chy-Chr8:16991819 8.89E-06 dispersed
Chy12g01298 Chy-Chr12:17432697 Chy02g02548 Chy-Chr2:28752355 1.08E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18886 PF02319 E2F_TDP 2.60E-20 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01298 K09391 - csv:101219210 660.218