Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01298 ATGGCGGCTCTGCCATCCTCTTCCGCTTTACCGGATTCTGCTTCCTCCAGACATCATACTTACAGTAGAAAGCAGAAATCCCTTGGTCTTTTATGCTCAAAGTATGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTCTGGAGAGCGTTGGGGTTCTATCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCTTTACAAGATCTCAAAGAAGAGGGATTGAGGGAGAATTGCAGCGCATCTGATGGTAACGATTATGCAAAAGTCTCGGATGATGAAGATGAGGATGAAAGATTTTCTAATCCAACTGGAAGCCAGACCTCAACTGCAGCTGTGCCAAAATCATCTTCATCATCGTTAAAAGCTGACAATAGAAGGGAGAAGTCATTGGCGCTCCTGACACAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGACGAAGCTGCTAAGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACTAAGGTAAGGCGGCTATACGACATTGCAAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACTCATACAACGGACACGAGAAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCAACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAATTCTGCCTATCAGGGTTTTAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGTGATAATTCTTCACAAGAGGATAGCCAGAACAGTCAGGATCAAGAATGTGAAAGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTATCAGTAGCTAAAGTTGGTGTCTTGGACAATAAAAATGTGAAGCGGACTCACGACTGGGAAAGCCTTTCCTCAACATTCCGTCCCCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTTTCTGGATGCAATTCTTGTGAAAGTAAATGATTACAAAGAAAACTTCCAAATCAGAGAAGTTGGCTTATCGATTCTGGATGATCTTCTGGACATTAAATTTTGGAGAAATCAAGGGAAAATTATGGCAGTGGTTAGTGGAATGATTCTCCTGATATCACTCGTGTTAACTGTCGATTTAAACTTTTAA 1233 41.77 MAALPSSSALPDSASSRHHTYSRKQKSLGLLCSKYGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAENSAYQGFNHCLNMQKLVQCDNSSQEDSQNSQDQECERTSKSYQFGPFAPVSVAKVGVLDNKNVKRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWFLDAILVKVNDYKENFQIREVGLSILDDLLDIKFWRNQGKIMAVVSGMILLISLVLTVDLNF* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17432697 17436124 - Chy12G218980.1 Chy12g01298 239079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01298 410 SUPERFAMILY Winged helix DNA-binding domain 32 68 IPR036390 -
Chy12g01298 410 Pfam E2F/DP family winged-helix DNA-binding domain 32 67 IPR003316 GO:0005667|GO:0006355
Chy12g01298 410 Pfam E2F/DP family winged-helix DNA-binding domain 136 214 IPR003316 GO:0005667|GO:0006355
Chy12g01298 410 Gene3D - 129 216 IPR036388 -
Chy12g01298 410 Gene3D - 33 70 IPR036388 -
Chy12g01298 410 SMART E2F_TDP_2 134 214 IPR003316 GO:0005667|GO:0006355
Chy12g01298 410 SMART E2F_TDP_2 23 67 IPR003316 GO:0005667|GO:0006355
Chy12g01298 410 MobiDBLite consensus disorder prediction 1 21 - -
Chy12g01298 410 MobiDBLite consensus disorder prediction 1 16 - -
Chy12g01298 410 SUPERFAMILY Winged helix DNA-binding domain 136 215 IPR036390 -
Chy12g01298 410 MobiDBLite consensus disorder prediction 85 132 - -
Chy12g01298 410 PANTHER TRANSCRIPTION FACTOR E2F 7 352 IPR015633 GO:0000978|GO:0006357
Chy12g01298 410 MobiDBLite consensus disorder prediction 110 128 - -
Chy12g01298 410 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 7 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01298 K09391 E2F7_8; transcription factor E2F7/8 - csv:101219210 660.218
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g02548 Chy12g01298 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01298 Chy-Chr12:17432697 Chy08g00971 Chy-Chr8:16991819 8.89E-06 dispersed
Chy12g01298 Chy-Chr12:17432697 Chy02g02548 Chy-Chr2:28752355 1.08E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g681 Blo04g00746 Blo16g00207 . . . Bpe13g00264 Bma06g00196 . Cmo13g00935 Cmo18g00114 Cma10g00152 . Car10g00143 . Sed08g0171 Cpe20g00223 . Bhi02g00386 Tan09g2196 Cmetu02g0961 . Hepe09g0165 . . Cla06g01632 Cam06g1815 Cec06g1865 Cco06g1871 Clacu06g1773 Cmu06g1715 Cre06g2535 . Cone16ag0131 . . Lsi02g00346 Csa01g00818 Chy12g01298 Cme12g01723 . . . Bda14g00825 . . Bma03g00799 . Sed08g2543 Cmo10g00164 . Cma13g00908 Cma18g00144 Car13g00748 Car18g00138 Cpe09g01047 Cpe18g00824 Bhi08g01449 Tan05g2045 . . . . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01514 Csa01g00185 Chy02g02548 Cme02g01934
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy12g01298 CCT 3 352 E2F-DP Transcription Factor Family AT3G48160 52.6 7.7e-90 327.8
Chy07g00856 . 65 279 E2F-DP Transcription Factor Family AT5G02470 53.5 4.2e-61 231.9
Chy08g00971 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.5 1.0e-117 420.6
Chy05g00206 . 68 488 E2F-DP Transcription Factor Family AT2G36010 54.0 6.4e-115 411.4
Chy05g00206 . 67 481 E2F-DP Transcription Factor Family AT5G22220 56.5 1.9e-108 389.8
Chy03g01393 . 150 254 E2F-DP Transcription Factor Family AT1G47870 72.4 7.4e-37 151.8
Chy07g00856 . 65 279 E2F-DP Transcription Factor Family AT5G02470 53.5 4.2e-61 231.9
Chy05g00206 . 67 481 E2F-DP Transcription Factor Family AT5G22220 56.5 1.9e-108 389.8
Chy08g00971 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.5 1.0e-117 420.6
Chy05g00206 . 68 488 E2F-DP Transcription Factor Family AT2G36010 54.0 6.4e-115 411.4
Chy03g01393 . 150 254 E2F-DP Transcription Factor Family AT1G47870 72.4 7.4e-37 151.8
Chy12g01298 CCT 3 352 E2F-DP Transcription Factor Family AT3G48160 52.6 7.7e-90 327.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18886 PF02319 E2F_TDP 2.60E-20 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01298 Chy_Chr12 FPKM 0.0 0.95927 0.0 0.791744 0.0 0.0 0.0 3.587703 4.410872 4.111686