Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy12g01298 | ATGGCGGCTCTGCCATCCTCTTCCGCTTTACCGGATTCTGCTTCCTCCAGACATCATACTTACAGTAGAAAGCAGAAATCCCTTGGTCTTTTATGCTCAAAGTATGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTCTGGAGAGCGTTGGGGTTCTATCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCTTTACAAGATCTCAAAGAAGAGGGATTGAGGGAGAATTGCAGCGCATCTGATGGTAACGATTATGCAAAAGTCTCGGATGATGAAGATGAGGATGAAAGATTTTCTAATCCAACTGGAAGCCAGACCTCAACTGCAGCTGTGCCAAAATCATCTTCATCATCGTTAAAAGCTGACAATAGAAGGGAGAAGTCATTGGCGCTCCTGACACAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGACGAAGCTGCTAAGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACTAAGGTAAGGCGGCTATACGACATTGCAAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACTCATACAACGGACACGAGAAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCAACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAATTCTGCCTATCAGGGTTTTAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGTGATAATTCTTCACAAGAGGATAGCCAGAACAGTCAGGATCAAGAATGTGAAAGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTATCAGTAGCTAAAGTTGGTGTCTTGGACAATAAAAATGTGAAGCGGACTCACGACTGGGAAAGCCTTTCCTCAACATTCCGTCCCCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTTTCTGGATGCAATTCTTGTGAAAGTAAATGATTACAAAGAAAACTTCCAAATCAGAGAAGTTGGCTTATCGATTCTGGATGATCTTCTGGACATTAAATTTTGGAGAAATCAAGGGAAAATTATGGCAGTGGTTAGTGGAATGATTCTCCTGATATCACTCGTGTTAACTGTCGATTTAAACTTTTAA | 1233 | 41.77 | MAALPSSSALPDSASSRHHTYSRKQKSLGLLCSKYGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAENSAYQGFNHCLNMQKLVQCDNSSQEDSQNSQDQECERTSKSYQFGPFAPVSVAKVGVLDNKNVKRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWFLDAILVKVNDYKENFQIREVGLSILDDLLDIKFWRNQGKIMAVVSGMILLISLVLTVDLNF* | 411 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 17432697 | 17436124 | - | Chy12G218980.1 | Chy12g01298 | 239079 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy12g01298 | 410 | SUPERFAMILY | Winged helix DNA-binding domain | 32 | 68 | IPR036390 | - | |
Chy12g01298 | 410 | Pfam | E2F/DP family winged-helix DNA-binding domain | 32 | 67 | IPR003316 | GO:0005667|GO:0006355 | |
Chy12g01298 | 410 | Pfam | E2F/DP family winged-helix DNA-binding domain | 136 | 214 | IPR003316 | GO:0005667|GO:0006355 | |
Chy12g01298 | 410 | Gene3D | - | 129 | 216 | IPR036388 | - | |
Chy12g01298 | 410 | Gene3D | - | 33 | 70 | IPR036388 | - | |
Chy12g01298 | 410 | SMART | E2F_TDP_2 | 134 | 214 | IPR003316 | GO:0005667|GO:0006355 | |
Chy12g01298 | 410 | SMART | E2F_TDP_2 | 23 | 67 | IPR003316 | GO:0005667|GO:0006355 | |
Chy12g01298 | 410 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Chy12g01298 | 410 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Chy12g01298 | 410 | SUPERFAMILY | Winged helix DNA-binding domain | 136 | 215 | IPR036390 | - | |
Chy12g01298 | 410 | MobiDBLite | consensus disorder prediction | 85 | 132 | - | - | |
Chy12g01298 | 410 | PANTHER | TRANSCRIPTION FACTOR E2F | 7 | 352 | IPR015633 | GO:0000978|GO:0006357 | |
Chy12g01298 | 410 | MobiDBLite | consensus disorder prediction | 110 | 128 | - | - | |
Chy12g01298 | 410 | PANTHER | E2F TRANSCRIPTION FACTOR-LIKE E2FF | 7 | 352 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Chy02g02548 | Chy12g01298 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy12g01298 | Chy-Chr12:17432697 | Chy08g00971 | Chy-Chr8:16991819 | 8.89E-06 | dispersed | |
Chy12g01298 | Chy-Chr12:17432697 | Chy02g02548 | Chy-Chr2:28752355 | 1.08E-95 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18886 | PF02319 | E2F_TDP | 2.60E-20 | CL0123 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy12g01298 | K09391 | - | csv:101219210 | 660.218 |