Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01312 ATGTATTCCCTTTTCAGTGGTTTACAAAACATAAGCTCTGCTGGAGAGCAACATCTCCAGAACACCAGTACCACTGCAACAATGTGGATGGGAGCAACATCCATGGCAGGGTGGTGGGCAGCTGCAGGTCCAACCATTGCAAGTTTCATGTTTGTGTGGGCTATGATTCAACAATCTTGCCCCCAAGCATTTCGTCATTACTTTCAAAAATACTCATTGAGATTCATGAACTACTTCCATCCTTACATCCAGATCTCAGTCCACGAATATGTTGGTGAACGCCTCAAGCGCAGTGAAGCTTTCTCAGCGGTTGAGTCATATCTCAGCAAAAATTCATCCCAAAGTGCTACACGACTCAAAGCTGAGATAGGACAAGATAGCACCAACTTGGTACTGAGTATGGATGATCATGAAAAGGTGACCGATGAATTTCAAGGAGTAAAAGTATGGTGGGTTTTAAACATGACAGGTTCGTCGAAAAATTCTGGCAATTCTTTTCCAAATCCTGATAGGAGATACTATACACTCACGTTTCATAAGCGGTGCAGAAAATTAATTACAGAAACATATTTGAAGCATGTCTTGGGTGAAGGGAAAGAAATCAGAGTGAGAAACAGGCAGAGGAAGCTTTTTACCAATGGCTCTGGTGGTAGATGGTATTACAGCCACACCATGTGGAGCCACATTGTATTTGAGCACCCTGCAACATTTGACACCATAGCAATGGACCCAGAGAAAAAGCAGGAGATTATAGATGATTTATTGACCTTCACCAGGAGCAAAGAGTTTTATGCTCGAATTGGGAAGGCATGGAAACGTGGTTATCTTTTATATGGTCCACCTGGGACAGGAAAGTCAACAATGATCGCTGCAATGGCCAATCTGCTAAATTATGATGTTTATGATCTGGAGCTCACTGCAGTGAAGAACAACACCCAGCTTCGAACACTTTTGATCGAAACGACAAGTAAATCGATCATTGTGATTGAGGATATTGATTGCTCACTTGATCTTACAGGGCAGAGGAAGAAGAAAGAAGAAAAGTCTACAGATGACAAAGAGAAATCCCCCAAAGAATCCTCAAAGAAAGAAGAGGACGACACCAGCAGTAAAGTCACTCTCTCGGGATTGTTGAACTTCATTGATGGAATATGGTCAGCTTGTGGTGGGGAAAGACTTGTTGTTTTCACAACCAATTATGTGGAGAAGCTTGATCCAGCCCTCATTAGAACAGGTCGGATGGACAAACATATTGAGCTTTCTTATTGCAGCTTCGAGGCATTCAAAGTTCTTGCAAAAAATTACTTGAATCTAGAGACTCATCTGCTATTTGATCAAATTAAAGAATTGATCGGATGTGTCAAAATCACCCCTGCTGATGTTGCAGAGAACCTCATGCCCAAGTCTCCTAATGATGATCCTGACAAACTTCTTCGCAAATTGATCCAAACTCTAGAACGGGTAAAAACTGCAGCAGTTGAAAGGGAATCTCAAGAAGTAAATCCTGAGGGTTTAACCAACTGA 1524 41.93 MYSLFSGLQNISSAGEQHLQNTSTTATMWMGATSMAGWWAAAGPTIASFMFVWAMIQQSCPQAFRHYFQKYSLRFMNYFHPYIQISVHEYVGERLKRSEAFSAVESYLSKNSSQSATRLKAEIGQDSTNLVLSMDDHEKVTDEFQGVKVWWVLNMTGSSKNSGNSFPNPDRRYYTLTFHKRCRKLITETYLKHVLGEGKEIRVRNRQRKLFTNGSGGRWYYSHTMWSHIVFEHPATFDTIAMDPEKKQEIIDDLLTFTRSKEFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKNNTQLRTLLIETTSKSIIVIEDIDCSLDLTGQRKKKEEKSTDDKEKSPKESSKKEEDDTSSKVTLSGLLNFIDGIWSACGGERLVVFTTNYVEKLDPALIRTGRMDKHIELSYCSFEAFKVLAKNYLNLETHLLFDQIKELIGCVKITPADVAENLMPKSPNDDPDKLLRKLIQTLERVKTAAVERESQEVNPEGLTN* 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17518111 17519634 + Chy12G219120.1 Chy12g01312 239093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01312 507 Pfam ATPase family associated with various cellular activities (AAA) 276 421 IPR003959 GO:0005524|GO:0016887
Chy12g01312 507 SMART AAA_5 271 424 IPR003593 -
Chy12g01312 507 Gene3D - 419 490 - -
Chy12g01312 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 469 IPR027417 -
Chy12g01312 507 PANTHER ATP BINDING PROTEIN 37 501 - -
Chy12g01312 507 MobiDBLite consensus disorder prediction 343 368 - -
Chy12g01312 507 CDD AAA 272 422 - -
Chy12g01312 507 PANTHER BCS1 AAA-TYPE ATPASE 37 501 - -
Chy12g01312 507 Gene3D - 227 418 IPR027417 -
Chy12g01312 507 Pfam Domain associated at C-terminal with AAA 61 153 IPR025753 -
Chy12g01312 507 ProSitePatterns AAA-protein family signature. 392 410 IPR003960 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01312 - - - csv:101220003 947.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02223 Chy-Chr2:26312218 Chy12g01312 Chy-Chr12:17518111 1.71E-121 dispersed
Chy04g00479 Chy-Chr4:4543008 Chy12g01312 Chy-Chr12:17518111 3.10E-118 dispersed
Chy04g01509 Chy-Chr4:21676330 Chy12g01312 Chy-Chr12:17518111 4.14E-10 dispersed
Chy04g01510 Chy-Chr4:21676992 Chy12g01312 Chy-Chr12:17518111 2.85E-86 dispersed
Chy04g01511 Chy-Chr4:21712854 Chy12g01312 Chy-Chr12:17518111 1.83E-87 dispersed
Chy05g00952 Chy-Chr5:14117262 Chy12g01312 Chy-Chr12:17518111 5.03E-109 dispersed
Chy07g01254 Chy-Chr7:17255273 Chy12g01312 Chy-Chr12:17518111 1.98E-111 dispersed
Chy09g00280 Chy-Chr9:2360904 Chy12g01312 Chy-Chr12:17518111 0 dispersed
Chy12g01311 Chy-Chr12:17513955 Chy12g01312 Chy-Chr12:17518111 0 tandem
Chy12g01312 Chy-Chr12:17518111 Chy12g01313 Chy-Chr12:17521419 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g477 . . . . . . . . Cmo13g00944 . . . . . . Cpe20g00212 . . . . . . . . . . . . . . . . . . . Lsi02g00331 Csa01g00805 Chy12g01312 Cme12g01737 . . . . . . . . Sed08g2559 . . Cma13g00919 Cma18g00135 Car13g00758 Car18g00127 Cpe09g01057 . Bhi08g01431 Tan05g2065 Cmetu12g1057 Lac10g0394 Hepe07g2269 . . Cla01g01413 Cam01g1479 Cec01g1518 Cco01g1564 Clacu01g1502 Cmu01g1395 Cre01g1315 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006739 0 1 0 0 0 2 1 2 2 2 1 2 1 1 3 1 2 0 1 2 2 1 2 2 2 2 1 1 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01312 Chy_Chr12 FPKM 0.573518 0.0 2.787854 2.890203 8.239422 4.502229 8.379449 4.119042 5.657066 4.527061