Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01317 ATGGGGAAAGATTACTATAACATACTCAAAGTAAGCCGAAGCGCTAGCGATGAAGATTTGAAGAGAGCTTACAAAAGATTAGCTTTGTTTTGGCATCCTGACAAGAACCCTTCTAACAAACATGAAGCTGAAGCCAAGTTCAAGCAAATTTCTGAAGCTTATGATGTTCTTAGCGATCCTCAGAAGCGTCAGATCTACGACCTTTATGGTGAAGAAACCCTCAAGTCCGGCAAGATTCCGCCGCCCAATCCTCACGCCACTTCCTCCTCTGCTTATTCTCCCGTTTACCAGCACTTTCAACGCCAGCATCCCAATACTTCTACGTTTAAGTTTAATCCCAGGAACGCGGATGATATTTATGCGGAATTTTTCGGATCCGAGGGCGGTGGCGGGAGTAATAATGTCGATGGGGGTGGGAAGAGTAGAGGGGTTAGGGATGAGTTTTTTAGGTTTCAGAATGGGATGGAGAATGGGAGTGGTGTTAAAGGGAGGAAGGCGGCTGCGGTTGAGAGTGCGTTGCCTTGTACCTTGGAGGAGCTATTTAAAGGCGCCAAAAAGAAGATGAGAATTTCGAGAAATGTTTATGATGTCTCTGGCAAGTTCCGGACAGTTGAAGAGATATTGACAATAGACATAAAGCCAGGGTGGAAGAAGGGGACAAAGATCACTTTTCCTCAGAAAGGAAATCAGGAGCCTGGCATCATTCCAGCAGATCTTATATTTGTAGTGGATGAGAAACCACATGCTATATACCGGAGAGATGGGAATGATCTAGTGGCGAACTATGAAATAACGCTCCTGGAATCACTCACAGGTAAAACTCTTGAACTTACTTCTCTGGATGGAAGGACTCTCACGATCCCTATTACGGATATTGTCAAACCTGGTGATGAGATGGTTCTGGCAAATGAAGGAATGCCAATCTCAAAGGAACCTGGGAAGAAGGGAAATTTGAGAATCAAATTTGATGTCAAATATCCATCAAGACTTACAACAGAACAGAAGTCTGATCTAATAAGAGTTCTTGGTGTAGTTTCATAG 1041 43.8 MGKDYYNILKVSRSASDEDLKRAYKRLALFWHPDKNPSNKHEAEAKFKQISEAYDVLSDPQKRQIYDLYGEETLKSGKIPPPNPHATSSSAYSPVYQHFQRQHPNTSTFKFNPRNADDIYAEFFGSEGGGGSNNVDGGGKSRGVRDEFFRFQNGMENGSGVKGRKAAAVESALPCTLEELFKGAKKKMRISRNVYDVSGKFRTVEEILTIDIKPGWKKGTKITFPQKGNQEPGIIPADLIFVVDEKPHAIYRRDGNDLVANYEITLLESLTGKTLELTSLDGRTLTIPITDIVKPGDEMVLANEGMPISKEPGKKGNLRIKFDVKYPSRLTTEQKSDLIRVLGVVS* 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17549501 17552129 + Chy12G219170.1 Chy12g01317 239098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01317 346 SUPERFAMILY Chaperone J-domain 3 78 IPR036869 -
Chy12g01317 346 PANTHER BNAA06G20720D PROTEIN 4 343 - -
Chy12g01317 346 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Chy12g01317 346 CDD DnaJ 4 59 IPR001623 -
Chy12g01317 346 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Chy12g01317 346 PRINTS DnaJ domain signature 42 62 IPR001623 -
Chy12g01317 346 PRINTS DnaJ domain signature 62 81 IPR001623 -
Chy12g01317 346 PRINTS DnaJ domain signature 24 39 IPR001623 -
Chy12g01317 346 PRINTS DnaJ domain signature 6 24 IPR001623 -
Chy12g01317 346 Gene3D - 167 246 - -
Chy12g01317 346 SMART dnaj_3 3 62 IPR001623 -
Chy12g01317 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 171 248 IPR008971 GO:0006457|GO:0051082
Chy12g01317 346 Pfam DnaJ domain 4 67 IPR001623 -
Chy12g01317 346 Gene3D DnaJ domain 2 136 IPR036869 -
Chy12g01317 346 Gene3D - 248 328 - -
Chy12g01317 346 CDD DnaJ_C 173 330 - -
Chy12g01317 346 Pfam DnaJ C terminal domain 170 327 IPR002939 -
Chy12g01317 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 251 336 IPR008971 GO:0006457|GO:0051082
Chy12g01317 346 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 4 343 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01317 K09510 DNAJB4; DnaJ homolog subfamily B member 4 - csv:101215798 670.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00626 Chy-Chr7:5887361 Chy12g01317 Chy-Chr12:17549501 2.62E-49 dispersed
Chy11g00668 Chy-Chr11:8226685 Chy12g01317 Chy-Chr12:17549501 1.04E-130 dispersed
Chy06g02048 Chy-Chr6:24669900 Chy12g01317 Chy-Chr12:17549501 2.43E-16 transposed
Chy10g00962 Chy-Chr10:15140876 Chy12g01317 Chy-Chr12:17549501 3.61E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g489 Blo04g00756 Blo16g00200 . . . Bpe13g00271 Bma06g00188 . Cmo13g00951 Cmo18g00102 . . . . . Cpe20g00207 . . . . . . . . . . . . . . . Cone2ag0864 Cone16ag0143 . . . Csa01g00799 Chy12g01317 Cme12g01743 . . Bda11g01684 Bda14g00836 . Bpe15g00616 Bma03g00809 . Sed08g2567 . . . Cma18g00131 Car13g00762 Car18g00123 Cpe09g01061 . Bhi08g01425 Tan05g2072 Cmetu12g0983 Lac10g0382 Hepe07g2276 . . Cla01g01417 Cam01g1483 Cec01g1522 Cco01g1569 Clacu01g1507 Cmu01g1399 Cre01g1319 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006344 2 2 2 2 2 1 2 1 1 1 1 1 0 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01317 Chy_Chr12 FPKM 1.603784 2.02139 6.304878 5.908867 8.586863 8.521843 8.597445 62.325779 62.318653 60.557392