Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01318 ATGGGGGAAAAACCAGAAGTGCTGGAGGCTGTGTTGAAGGAAGCTGTGGATTTGGAAAATATACCCATTGATGAGGTTTTTGAAAATCTGAGATGTAGCAAAGAGGGTCTTACTAGTGAGGGTGCTGAGGAAAGGCTGAAGATTTTTGGCCACAATAAGCTTGAGGAAAAGAAGGAAAGCAAAGTTTTGAAGTTTTTGGGTTTCATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCAATTATGGCCATTGCACTTGCAAATGGAGGAGGAAAGCCCCCGGATTGGCAAGATTTTGTTGGCATCATCACCCTGCTTATCATTAACTCTACAATCAGTTTTATTGAGGAAAACAATGCAGGAAATGCTGCAGCTGCTCTCATGGCTCGTCTTGCTCCCAAAGCCAAGGTTCTTAGAGATGGAAGGTGGAGCGAGCAAGATGCTTCCATTTTAGTTCCTGGGGACGTAATCAGTGTTAAACTTGGGGACATTATTCCAGCTGATGCTCGTCTTCTGGATGGGGATCCACTAAAAATTGACCAGTCTGCGCTTACAGGCGAATCTCTTCCTGTAACGAAAGGACCTGGTGATGGTGTGTACTCCGGTTCTACTTGCAAGCAAGGAGAGATTGAAGCTGTGGTCATTGCTACTGGTGTTCACACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAACCAAGTGGGACACTTCCAAAAGGCAAGAAGATGTGTCATTGTCTTGACAGCCATAGGGAATTTCTGCATATGTTCCATTGCTTTGGGAATGGTAATAGAGATCATTGTAATGTACCCAATTCAGGACCGAGAGTATCGTCCTGGAATTGATAACCTCCTTGTGCTATTGATTGGAGGAATTCCTATAGCCATGCCTACAGTTCTATCTGTGACAATGGCTATTGGTTCTCATAGGTTATCCCAACAGGGTGCCATCACGAAGAGGATGACAGCAATTGAAGAAATGGCAGGCATGGATGTCCTTTGCAGTGATAAGACGGGAACCCTGACTTTGAACAAGTTAACTGTTGACAAAAATCTTGTTGAGGTTTTCGGTAAAGGTATAGATGCAGACACTATTGTTCTAATGGCTGCTCGAGCATCAAGAATTGAGAATCAAGATGCTATTGATACCGCCATTGTTGGGATGCTAGCTGATCCAAAGGAGGCACGTGCTGGGATTCAGGAAGTACATTTTCTTCCTTTCAATCCTACTGATAAGCGAACAGCTTTGACTTATATTGACCACGAGGGCAAGATGCACAGAGTCAGTAAAGGTGCTCCAGAACAGATTCTAAATCTTGCATACAACAAGTCAGAGATTGAGAGAAGAGTTCATGCAGTGATTGATAAATTTGCTGAACGAGGTTTGCGTTCGCTTGCTGTAGCATACCAGGAAGTTCCAGAAGGAAGAAAAGAAAGTCCTGGAGGTCCCTGGCAATTCATGGGCCTCTTGCCTTTGTTTGATCCACCGAGACATGATAGTGCAGAGACAATTAGGAGAGCTTTAAATCTCGGAGTAAACGTGAAAATGATTACCGGAGATCAGCTGGCTATAGGCAAGGAAACAGGACGTCGATTGGGGATGGGAACCAACATGTATCCATCATCTGCTTTGCTGGGACAGGAAAAGGATGAGTCAATTGCTGCTTTACCTGTTGACGATCTTATCGAGAAAGCAGATGGTTTTGCGGGTGTATTCCCTGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTATGAAACATATCTGTGGTATGACTGGTGATGGAGTGAATGATGCTCCTGCACTTAAAAAAGCAGACATAGGTATAGCTGTTGCAGATGCAACTGATGCTGCTCGGAGTGCTTCTGATATTGTTCTTACTGAACCTGGTCTCAGTGTTATCATCAGTGCTGTCTTGACTAGTAGAGCAATATTTCAGAGAATGAAGAATTACACGATTTATGCGGTTTCCATCACAATACGTATTGTGCTTGGTTTCATGTTGCTGGCTCTCATTTGGAAATTTGATTTTCCACCATTTATGGTGCTTATCATTGCTATCCTTAATGATGGTACAATCATGACAATATCAAAGGATAGGGTTAAACCATCTCCTCTGCCAGATAGTTGGAAGCTGGCTGAAATTTTTACTACTGGCGTTGTACTTGGTAGTTACTTGGCAATGATGACGGTCATATTTTTTTGGGCGTCGTATAAAACCAACTTTTTCCCTCGAATCTTTGGAGTATCAACCCTTGAAAAAACAGCTCATGATGATTTCCGGAAGCTAGCCTCAGCTATATATCTGCAAGTGAGCACCATCAGCCAGGCTCTCATTTTTGTTACGAGATCTCGAAGTTGGTCCTACGTCGAGCGTCCTGGGTTATTTCTTGTAGTGGCTTTTATTCTTGCTCAACTGGTTGCCACTCTGATTGCTGTCTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTAATTTGGCTTTATAACATCATCTTTTATATTCCTCTTGATCCCATAAAGTTTGCTATTCGATATGCTTTGAGTGGGAAGGCTTGGGATCTCATGCTTGAGCAAAGGGTTGCTTTCACAAGACAAAAGGATTTTGGTAAGGAACAACGTGAGCTACAATGGGCTCACGCCCAAAGAACGTTGCATGGTTTGCAACCGCCTGATACTAAGATGTTCACCGAGAGAACTCATTTCACAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGGTATGTTGCAAAACGTCATTTTTGGCTTGACATGTATTTGAAACTGATGGCTGGTTTAAGTTATCATTCTGCAATCACCAATTTGGTTTCATTTCATAAATCTTGCAGATTGAGAGAACTCCATACACTGAAAGGCCATGTAGAGTCAGTGGTGAGATTGAAGGGTCTCGATATTGAAACAATCCAACAAGCATACACCGTGTAA 2997 43.01 MGEKPEVLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEGAEERLKIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWSEQDASILVPGDVISVKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKARRCVIVLTAIGNFCICSIALGMVIEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFGKGIDADTIVLMAARASRIENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAYNKSEIERRVHAVIDKFAERGLRSLAVAYQEVPEGRKESPGGPWQFMGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQEKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGSYLAMMTVIFFWASYKTNFFPRIFGVSTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGLFLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFAIRYALSGKAWDLMLEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFTELNHMAEEAKRRAEIARYVAKRHFWLDMYLKLMAGLSYHSAITNLVSFHKSCRLRELHTLKGHVESVVRLKGLDIETIQQAYTV* 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17564665 17569776 + Chy12G219180.1 Chy12g01318 239099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01318 998 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Chy12g01318 998 Pfam haloacid dehalogenase-like hydrolase 333 610 - -
Chy12g01318 998 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Chy12g01318 998 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 859 IPR023298 -
Chy12g01318 998 ProSitePatterns E1-E2 ATPases phosphorylation site. 339 345 IPR018303 -
Chy12g01318 998 Gene3D - 96 827 - -
Chy12g01318 998 Gene3D - 334 633 IPR023214 -
Chy12g01318 998 PANTHER CALCIUM-TRANSPORTING ATPASE 3 943 - -
Chy12g01318 998 SUPERFAMILY HAD-like 333 643 IPR036412 -
Chy12g01318 998 SFLD Haloacid Dehalogenase 319 647 - -
Chy12g01318 998 CDD P-type_ATPase_H 36 853 IPR006534 GO:0008553|GO:0016021|GO:0120029
Chy12g01318 998 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Chy12g01318 998 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 571 684 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy12g01318 998 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 354 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy12g01318 998 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 36 818 IPR006534 GO:0008553|GO:0016021|GO:0120029
Chy12g01318 998 Gene3D - 134 218 - -
Chy12g01318 998 PRINTS P-type cation-transporting ATPase superfamily signature 491 502 - -
Chy12g01318 998 PRINTS P-type cation-transporting ATPase superfamily signature 337 351 - -
Chy12g01318 998 PRINTS P-type cation-transporting ATPase superfamily signature 513 523 - -
Chy12g01318 998 PRINTS P-type cation-transporting ATPase superfamily signature 596 615 - -
Chy12g01318 998 PRINTS P-type cation-transporting ATPase superfamily signature 619 631 - -
Chy12g01318 998 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Chy12g01318 998 Gene3D - 349 496 IPR023299 GO:0000166
Chy12g01318 998 PRINTS H+-transporting ATPase (proton pump) signature 627 652 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy12g01318 998 PRINTS H+-transporting ATPase (proton pump) signature 568 584 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy12g01318 998 PRINTS H+-transporting ATPase (proton pump) signature 772 793 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy12g01318 998 PRINTS H+-transporting ATPase (proton pump) signature 453 471 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy12g01318 998 PRINTS H+-transporting ATPase (proton pump) signature 596 612 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy12g01318 998 Pfam E1-E2 ATPase 132 316 - -
Chy12g01318 998 Gene3D - 911 939 - -
Chy12g01318 998 Gene3D - 965 998 - -
Chy12g01318 998 PANTHER PLASMA MEMBRANE ATPASE 1 3 943 - -
Chy12g01318 998 SFLD p-type atpase 319 647 IPR044492 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02522 Chy12g01318 CCT
Chy02g02522 Chy12g01318 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00815 Chy-Chr3:11339024 Chy12g01318 Chy-Chr12:17564665 1.71E-09 dispersed
Chy02g01909 Chy-Chr2:22211847 Chy12g01318 Chy-Chr12:17564665 8.28E-19 transposed
Chy12g01318 Chy-Chr12:17564665 Chy02g02522 Chy-Chr2:28585261 0 wgd
Chy12g01318 Chy-Chr12:17564665 Chy09g00272 Chy-Chr9:2252574 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01318 K01535 - csv:101214920 1794.25