Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy12g01318 | ATGGGGGAAAAACCAGAAGTGCTGGAGGCTGTGTTGAAGGAAGCTGTGGATTTGGAAAATATACCCATTGATGAGGTTTTTGAAAATCTGAGATGTAGCAAAGAGGGTCTTACTAGTGAGGGTGCTGAGGAAAGGCTGAAGATTTTTGGCCACAATAAGCTTGAGGAAAAGAAGGAAAGCAAAGTTTTGAAGTTTTTGGGTTTCATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCAATTATGGCCATTGCACTTGCAAATGGAGGAGGAAAGCCCCCGGATTGGCAAGATTTTGTTGGCATCATCACCCTGCTTATCATTAACTCTACAATCAGTTTTATTGAGGAAAACAATGCAGGAAATGCTGCAGCTGCTCTCATGGCTCGTCTTGCTCCCAAAGCCAAGGTTCTTAGAGATGGAAGGTGGAGCGAGCAAGATGCTTCCATTTTAGTTCCTGGGGACGTAATCAGTGTTAAACTTGGGGACATTATTCCAGCTGATGCTCGTCTTCTGGATGGGGATCCACTAAAAATTGACCAGTCTGCGCTTACAGGCGAATCTCTTCCTGTAACGAAAGGACCTGGTGATGGTGTGTACTCCGGTTCTACTTGCAAGCAAGGAGAGATTGAAGCTGTGGTCATTGCTACTGGTGTTCACACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAACCAAGTGGGACACTTCCAAAAGGCAAGAAGATGTGTCATTGTCTTGACAGCCATAGGGAATTTCTGCATATGTTCCATTGCTTTGGGAATGGTAATAGAGATCATTGTAATGTACCCAATTCAGGACCGAGAGTATCGTCCTGGAATTGATAACCTCCTTGTGCTATTGATTGGAGGAATTCCTATAGCCATGCCTACAGTTCTATCTGTGACAATGGCTATTGGTTCTCATAGGTTATCCCAACAGGGTGCCATCACGAAGAGGATGACAGCAATTGAAGAAATGGCAGGCATGGATGTCCTTTGCAGTGATAAGACGGGAACCCTGACTTTGAACAAGTTAACTGTTGACAAAAATCTTGTTGAGGTTTTCGGTAAAGGTATAGATGCAGACACTATTGTTCTAATGGCTGCTCGAGCATCAAGAATTGAGAATCAAGATGCTATTGATACCGCCATTGTTGGGATGCTAGCTGATCCAAAGGAGGCACGTGCTGGGATTCAGGAAGTACATTTTCTTCCTTTCAATCCTACTGATAAGCGAACAGCTTTGACTTATATTGACCACGAGGGCAAGATGCACAGAGTCAGTAAAGGTGCTCCAGAACAGATTCTAAATCTTGCATACAACAAGTCAGAGATTGAGAGAAGAGTTCATGCAGTGATTGATAAATTTGCTGAACGAGGTTTGCGTTCGCTTGCTGTAGCATACCAGGAAGTTCCAGAAGGAAGAAAAGAAAGTCCTGGAGGTCCCTGGCAATTCATGGGCCTCTTGCCTTTGTTTGATCCACCGAGACATGATAGTGCAGAGACAATTAGGAGAGCTTTAAATCTCGGAGTAAACGTGAAAATGATTACCGGAGATCAGCTGGCTATAGGCAAGGAAACAGGACGTCGATTGGGGATGGGAACCAACATGTATCCATCATCTGCTTTGCTGGGACAGGAAAAGGATGAGTCAATTGCTGCTTTACCTGTTGACGATCTTATCGAGAAAGCAGATGGTTTTGCGGGTGTATTCCCTGAGCACAAATATGAGATTGTAAAACGCTTGCAAGCTATGAAACATATCTGTGGTATGACTGGTGATGGAGTGAATGATGCTCCTGCACTTAAAAAAGCAGACATAGGTATAGCTGTTGCAGATGCAACTGATGCTGCTCGGAGTGCTTCTGATATTGTTCTTACTGAACCTGGTCTCAGTGTTATCATCAGTGCTGTCTTGACTAGTAGAGCAATATTTCAGAGAATGAAGAATTACACGATTTATGCGGTTTCCATCACAATACGTATTGTGCTTGGTTTCATGTTGCTGGCTCTCATTTGGAAATTTGATTTTCCACCATTTATGGTGCTTATCATTGCTATCCTTAATGATGGTACAATCATGACAATATCAAAGGATAGGGTTAAACCATCTCCTCTGCCAGATAGTTGGAAGCTGGCTGAAATTTTTACTACTGGCGTTGTACTTGGTAGTTACTTGGCAATGATGACGGTCATATTTTTTTGGGCGTCGTATAAAACCAACTTTTTCCCTCGAATCTTTGGAGTATCAACCCTTGAAAAAACAGCTCATGATGATTTCCGGAAGCTAGCCTCAGCTATATATCTGCAAGTGAGCACCATCAGCCAGGCTCTCATTTTTGTTACGAGATCTCGAAGTTGGTCCTACGTCGAGCGTCCTGGGTTATTTCTTGTAGTGGCTTTTATTCTTGCTCAACTGGTTGCCACTCTGATTGCTGTCTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTAATTTGGCTTTATAACATCATCTTTTATATTCCTCTTGATCCCATAAAGTTTGCTATTCGATATGCTTTGAGTGGGAAGGCTTGGGATCTCATGCTTGAGCAAAGGGTTGCTTTCACAAGACAAAAGGATTTTGGTAAGGAACAACGTGAGCTACAATGGGCTCACGCCCAAAGAACGTTGCATGGTTTGCAACCGCCTGATACTAAGATGTTCACCGAGAGAACTCATTTCACAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGGTATGTTGCAAAACGTCATTTTTGGCTTGACATGTATTTGAAACTGATGGCTGGTTTAAGTTATCATTCTGCAATCACCAATTTGGTTTCATTTCATAAATCTTGCAGATTGAGAGAACTCCATACACTGAAAGGCCATGTAGAGTCAGTGGTGAGATTGAAGGGTCTCGATATTGAAACAATCCAACAAGCATACACCGTGTAA | 2997 | 43.01 | MGEKPEVLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEGAEERLKIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWSEQDASILVPGDVISVKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKARRCVIVLTAIGNFCICSIALGMVIEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFGKGIDADTIVLMAARASRIENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAYNKSEIERRVHAVIDKFAERGLRSLAVAYQEVPEGRKESPGGPWQFMGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQEKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGSYLAMMTVIFFWASYKTNFFPRIFGVSTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGLFLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFAIRYALSGKAWDLMLEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFTELNHMAEEAKRRAEIARYVAKRHFWLDMYLKLMAGLSYHSAITNLVSFHKSCRLRELHTLKGHVESVVRLKGLDIETIQQAYTV* | 999 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 17564665 | 17569776 | + | Chy12G219180.1 | Chy12g01318 | 239099 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy12g01318 | 998 | Pfam | Cation transporter/ATPase, N-terminus | 20 | 83 | IPR004014 | - | |
Chy12g01318 | 998 | Pfam | haloacid dehalogenase-like hydrolase | 333 | 610 | - | - | |
Chy12g01318 | 998 | SMART | Cation_ATPase_N_a_2 | 17 | 89 | IPR004014 | - | |
Chy12g01318 | 998 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 17 | 859 | IPR023298 | - | |
Chy12g01318 | 998 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 339 | 345 | IPR018303 | - | |
Chy12g01318 | 998 | Gene3D | - | 96 | 827 | - | - | |
Chy12g01318 | 998 | Gene3D | - | 334 | 633 | IPR023214 | - | |
Chy12g01318 | 998 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 3 | 943 | - | - | |
Chy12g01318 | 998 | SUPERFAMILY | HAD-like | 333 | 643 | IPR036412 | - | |
Chy12g01318 | 998 | SFLD | Haloacid Dehalogenase | 319 | 647 | - | - | |
Chy12g01318 | 998 | CDD | P-type_ATPase_H | 36 | 853 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Chy12g01318 | 998 | SUPERFAMILY | Calcium ATPase, transduction domain A | 134 | 231 | IPR008250 | - | |
Chy12g01318 | 998 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 571 | 684 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Chy12g01318 | 998 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 103 | 354 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Chy12g01318 | 998 | TIGRFAM | ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase | 36 | 818 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Chy12g01318 | 998 | Gene3D | - | 134 | 218 | - | - | |
Chy12g01318 | 998 | PRINTS | P-type cation-transporting ATPase superfamily signature | 491 | 502 | - | - | |
Chy12g01318 | 998 | PRINTS | P-type cation-transporting ATPase superfamily signature | 337 | 351 | - | - | |
Chy12g01318 | 998 | PRINTS | P-type cation-transporting ATPase superfamily signature | 513 | 523 | - | - | |
Chy12g01318 | 998 | PRINTS | P-type cation-transporting ATPase superfamily signature | 596 | 615 | - | - | |
Chy12g01318 | 998 | PRINTS | P-type cation-transporting ATPase superfamily signature | 619 | 631 | - | - | |
Chy12g01318 | 998 | PRINTS | P-type cation-transporting ATPase superfamily signature | 181 | 195 | - | - | |
Chy12g01318 | 998 | Gene3D | - | 349 | 496 | IPR023299 | GO:0000166 | |
Chy12g01318 | 998 | PRINTS | H+-transporting ATPase (proton pump) signature | 627 | 652 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Chy12g01318 | 998 | PRINTS | H+-transporting ATPase (proton pump) signature | 568 | 584 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Chy12g01318 | 998 | PRINTS | H+-transporting ATPase (proton pump) signature | 772 | 793 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Chy12g01318 | 998 | PRINTS | H+-transporting ATPase (proton pump) signature | 453 | 471 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Chy12g01318 | 998 | PRINTS | H+-transporting ATPase (proton pump) signature | 596 | 612 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Chy12g01318 | 998 | Pfam | E1-E2 ATPase | 132 | 316 | - | - | |
Chy12g01318 | 998 | Gene3D | - | 911 | 939 | - | - | |
Chy12g01318 | 998 | Gene3D | - | 965 | 998 | - | - | |
Chy12g01318 | 998 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 3 | 943 | - | - | |
Chy12g01318 | 998 | SFLD | p-type atpase | 319 | 647 | IPR044492 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Chy02g02522 | Chy12g01318 | CCT | |
Chy02g02522 | Chy12g01318 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy03g00815 | Chy-Chr3:11339024 | Chy12g01318 | Chy-Chr12:17564665 | 1.71E-09 | dispersed | |
Chy02g01909 | Chy-Chr2:22211847 | Chy12g01318 | Chy-Chr12:17564665 | 8.28E-19 | transposed | |
Chy12g01318 | Chy-Chr12:17564665 | Chy02g02522 | Chy-Chr2:28585261 | 0 | wgd | |
Chy12g01318 | Chy-Chr12:17564665 | Chy09g00272 | Chy-Chr9:2252574 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy12g01318 | K01535 | - | csv:101214920 | 1794.25 |