Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01323 ATGGCGGGCCGGAGAGTCTACGGCGGCGACGACGGTGGTAGTATAAGTGGTGGTTCTTCTAATCATAGTATTTTACTTCAGAATCGTTGTTCAAGATCCATGATGAGTTTCGAAGATATTCGTGGAGGAAACGGATCGAATAGATCGTTCTTTTGCCCGTTAGATAGTGAAGATAATGGGGATGAAGACTTGGATGATTACTTCCATCACCCTGAAAAAAAAAGGCGATTAACCGTTGATCAAGTCCGGTTCCTCGAGAAAAGTTTCGAGACCGAGAACAAGCTCGAGCCAGAAAGAAAAGTTCAATTAGCAAAGGACCTTGGTCTGCAGCCTCGTCAGGTTGCTATATGGTTTCAAAATCGCCGAGCTCGGTGGAAAACTAAACAGCTGGAGAAGGACTACGAGGCTCTTCAATCCAGCTATGGAAGCCTTAAGGTTGACTATGAAAACTTACTCAAGGAGAAGGATTCACTAAAAGCTGAGATTCTTCTCCTAACAGACAAACTGCTACACAAAGAAAAAGAAAGAGGAAACTCTGTGCTGTCTGAAGTTGACAAATTTGGTGAAGAATTACCACACAATCTGGTTGCTGATTCAAATTTGGAGGATGAAGTTTCCAAATCTTCAAAGCTGGGTTGTAAGCAAGAGGATATCAGTTCAGTCAAAAGTGATATATTTGATTCAGATAGCCCACACTACACTGATGGGGTTCATTCTTCACTCCTAGAGCCTGGAGATTCTTCCTATATTTTCGATCCTGATCAGTCCGACTTATCGCAAGACGAAGAAGATAACTTGGGAAGGAATCTATTGCCTCCTTATATCTTCCCAAAGCTCGAAGATGTCGATTACTCTGACCCGCCCACAAGTTCTTGTAATTTTGTATTCCCCATTGAAGACAATGCCCTTTGGTCCTGGTCTTTGTGA 927 42.83 MAGRRVYGGDDGGSISGGSSNHSILLQNRCSRSMMSFEDIRGGNGSNRSFFCPLDSEDNGDEDLDDYFHHPEKKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVDYENLLKEKDSLKAEILLLTDKLLHKEKERGNSVLSEVDKFGEELPHNLVADSNLEDEVSKSSKLGCKQEDISSVKSDIFDSDSPHYTDGVHSSLLEPGDSSYIFDPDQSDLSQDEEDNLGRNLLPPYIFPKLEDVDYSDPPTSSCNFVFPIEDNALWSWSL* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17588638 17590255 - Chy12G219230.1 Chy12g01323 239104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01323 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 33 305 - -
Chy12g01323 308 Coils Coil 141 168 - -
Chy12g01323 308 SUPERFAMILY Homeodomain-like 58 130 IPR009057 -
Chy12g01323 308 PRINTS Lambda-repressor HTH signature 99 108 IPR000047 GO:0003677
Chy12g01323 308 PRINTS Lambda-repressor HTH signature 108 124 IPR000047 GO:0003677
Chy12g01323 308 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Chy12g01323 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 33 305 IPR045224 GO:0003700
Chy12g01323 308 Gene3D - 68 135 - -
Chy12g01323 308 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Chy12g01323 308 MobiDBLite consensus disorder prediction 1 21 - -
Chy12g01323 308 CDD homeodomain 73 129 IPR001356 GO:0003677
Chy12g01323 308 Pfam Homeobox associated leucine zipper 128 169 IPR003106 GO:0006355|GO:0043565
Chy12g01323 308 Pfam Homeodomain 73 126 IPR001356 GO:0003677
Chy12g01323 308 SMART HOX_1 71 132 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01323 - - - csv:101215160 588.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00736 Chy-Chr2:4526454 Chy12g01323 Chy-Chr12:17588638 1.62E-40 dispersed
Chy04g00238 Chy-Chr4:2150756 Chy12g01323 Chy-Chr12:17588638 1.58E-37 dispersed
Chy04g01468 Chy-Chr4:21334913 Chy12g01323 Chy-Chr12:17588638 4.31E-45 dispersed
Chy09g00328 Chy-Chr9:2838024 Chy12g01323 Chy-Chr12:17588638 1.06E-43 dispersed
Chy10g00985 Chy-Chr10:15331665 Chy12g01323 Chy-Chr12:17588638 2.90E-36 dispersed
Chy07g01276 Chy-Chr7:17481412 Chy12g01323 Chy-Chr12:17588638 4.01E-26 transposed
Chy10g00972 Chy-Chr10:15202738 Chy12g01323 Chy-Chr12:17588638 6.97E-35 wgd
Chy12g01323 Chy-Chr12:17588638 Chy09g00265 Chy-Chr9:2206181 2.77E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18887 PF00046 Homeodomain 8.80E-17 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01323 Chy_Chr12 FPKM 0.0 0.0 7.487997 6.280862 25.003216 33.581226 21.26049 7.479316 6.106647 7.686525