Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01326 ATGAGAGAGACAAAAACCACCATTGTTGGGATTAAACTTCTAATGATATTTGGTTTTGTAATGATATTTCCAACAGTAAAGGCTAATATTGCAGATTTTGATGAAGTCTGGCAGAAAAGAGCTATAGAAGCACAAAAAGCTTCCTTTGAGGCCTACGAACCCCATCCAGAAGAAGAAACTAATAATTTCAACAAGCAAGTTCATAGATCTTTAGATGGTGGAAATAACACAAGGAGACATTTGAGGAAGTACACTGGTCCATGTTTAGCCACGAATCCGATTGATCGATGCTGGAGATGCGATAGAAATTGGGCTAGAAACCGCAAGAAACTAGCTGATTGTGCCCTTGGTTTCGGTCGTCGAACGACCGGAGGCAAAGATGGAAAGATTTACGTGGTCCGAGATTCGAGTGATAACGACTTGGTGAATCCTAAACCAGGAACCTTGCGCCATGCTGTGATTCAGGAGAGACCTCTTTGGATTATATTTGCTCGTGACATGGTGATTAGGCTAAGTGAAGAGCTTATAATGACTGATGATAAAACATTAGATGGGCGAGGTGCTAATGTGCACATTGCTAATGGTGGTCAAATTACTCTACAATTTGTGAAGAATATAATCATCCATAATCTTCATATTCATGACATCAAGGCTGGCAATGGAGGCTTTATAAGAGATTCGGTGAGCCACTATGGATTCCGAACACAGAGTGATGGTGATGGAATCTCGATGTTTGGAGCCTCGAGGGTTTGGATCGATCATGTTTCAATGTCTAATTGTCAAGATGGACTAATAGATGCAGTCATGGCATCTACTGCCATTACCATTTCCAACTGCCACTTCACCCACCATAATGATGTGATTTTATTAGGTGCAAGTAATAGCTACTCGAATGATCAGATAATGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGTCGATGGGGATTTATCCATGTAGTCAATAATGACTACACTCACTGGCTTATGTACGCCATCGGCGGCAGCCACAACCCCACCATTATCAGCCAGGGCAACCGTTTCATTGCTCCACCAAATCCAAATTCCAAAGAGGTGACGAAAAGGGTGTATGCACCGGAAAGCGAATGGAGATCTTGGAACTGGAGGTCAGAGGGGGATCTGATGATGAATGGAGCTTTCTTCATCCAATCTGGGAACCCCATCAAAAGATACTCCAAGAAAGATGTTATCCATTCGAAACCCGGGACCTTCGTCACCAGGCTTACACGATTTGCCGGCCCTCTGAAATGTAAAAAGAATCAACCCTGTTAG 1320 42.88 MRETKTTIVGIKLLMIFGFVMIFPTVKANIADFDEVWQKRAIEAQKASFEAYEPHPEEETNNFNKQVHRSLDGGNNTRRHLRKYTGPCLATNPIDRCWRCDRNWARNRKKLADCALGFGRRTTGGKDGKIYVVRDSSDNDLVNPKPGTLRHAVIQERPLWIIFARDMVIRLSEELIMTDDKTLDGRGANVHIANGGQITLQFVKNIIIHNLHIHDIKAGNGGFIRDSVSHYGFRTQSDGDGISMFGASRVWIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVILLGASNSYSNDQIMQVTLAFNHFGKGLVQRMPRCRWGFIHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNSKEVTKRVYAPESEWRSWNWRSEGDLMMNGAFFIQSGNPIKRYSKKDVIHSKPGTFVTRLTRFAGPLKCKKNQPC* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17608593 17610339 + Chy12G219260.1 Chy12g01326 239107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01326 439 Pfam Pectate lyase, N terminus 29 81 IPR007524 GO:0030570
Chy12g01326 439 PANTHER PECTATE LYASE 12 439 - -
Chy12g01326 439 MobiDBLite consensus disorder prediction 52 78 - -
Chy12g01326 439 Pfam Pectate lyase 179 357 IPR002022 -
Chy12g01326 439 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Chy12g01326 439 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Chy12g01326 439 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Chy12g01326 439 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Chy12g01326 439 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Chy12g01326 439 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Chy12g01326 439 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Chy12g01326 439 PANTHER PECTATE LYASE 18-RELATED 12 439 IPR045032 GO:0030570
Chy12g01326 439 SMART amb_all 166 363 IPR002022 -
Chy12g01326 439 Gene3D - 91 432 IPR012334 -
Chy12g01326 439 SUPERFAMILY Pectin lyase-like 81 433 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00980 Chy-Chr3:13289445 Chy12g01326 Chy-Chr12:17608593 0 dispersed
Chy12g01211 Chy-Chr12:16852088 Chy12g01326 Chy-Chr12:17608593 4.49E-174 dispersed
Chy10g00978 Chy-Chr10:15262669 Chy12g01326 Chy-Chr12:17608593 0 wgd
Chy12g01326 Chy-Chr12:17608593 Chy04g01518 Chy-Chr4:21773250 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01326 K01728 - csv:101218812 899.042