Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01329 ATGGAGGCTGCTGCTGCTTTTGGCCGTCCAAGGCCTGTCGTCAAGACCGAGAAACCTCCCCTTCGCGACCTTAGTGACAACGATCGGAATTCTCCCTCTAAACAACAACAACTTCTCCTCGTTAAGAGAGGGAATAACCATGCAAAACAAGAACATGATACTACTGAAGATAAAACAAGTTGTTCATCTGATCAAAAGGATTTGAGCAGCATCAAACTGCAGGAAGATCAATTGGAATCTGCTCGAGCAGAAATGGGGGAAGTAAGAGAAGAAAACCAAAGACTAAAACAGAGTTTAACTCAAATCATGAAGGATTATGAAGCTTTGAAAATGCAATTCCTGGGGATTGTTGGACGAGACTCTAAGAAAGTACAAGACGAAGACAACGACTCGAATAAGGAACAACAACAACATGATGACGATCAAATCGAGCTGGTTTCACTTTCTCTGGGGAGATTTCCGGTGTCGGAGAAGAAAAAAATAGTCGATGAGAAAAGCTCTATGAATATCGTCAGCGGTGACCACAACGAAGAAGCCGCCTGTAAAGAGGCTTTATCTCTCGGTTTGAACTGTAAATTCGAACGGGAAGAATCAATGATGGCCGTCGCTAAAGAAGTCGATTCTCCAAATAGTTTTGATCATGAGTCGACGAAGGAAGAAGCTGGAGAGACAAATTGGCCATCTAAAGGAGGGAAGACAATGAGAAGTGTTGAAGATGATGTTACACCGCAGAATCCACCCAAACGTGCTAGAGTTTGTGTTAGAGCCCGATGCGAAACCGCCACGATGAACGACGGTTGTCAATGGAGGAAATACGGGCAAAAGATAGCAAAAGGAAACCCATGTCCACGAGCATATTATCGTTGCACAGGTTCACCAACATGTCCTGTAAGAAAACAAGTCCAAAGATGTGCTGACGACATGTCGATTTTGATCACCACCTATGAAGGTAATCACAACCACCCGTTACCGGCCTCCGCCAACGCCATGGCCTCCACCACCTCCGCTGCTGCCTCCATGCTCCTCTCTGGCTCCACCACCTCCGCAACGGCAGCCTCCTCCTTGTCCACCGCCTCGAATAGTCTCCATGGCCTAAACTTTTACCCAAATAATTCTAAACCCAATTATTACTTACCCAACAGTAATTCGTCTATAATTTCATCCACTTCTCCAACTCACCCCACAATCACTTTGGACCTCACTTCAAATCCTTCTTCCTCTCCTTCAAATTCCTCAACCCATTTTGGTAAATTCACATCTAATTTTCCTAATTCTCGTTACCCTTTTACTGGGCAACTTGATTTTGGATCTTCTAGAAACAATGTGTTATCGTGGAATAACGGTCCTCTTAGTTACAACAGAAATAACCACCCTACTACTACTACTACAACGGCCAACAATATCTACCAAAACTACATCCAACAACAACAACGAAACCCCGCCACATCGCTACAACATCAGCAACCGCCTTTACCCGACACCATTGCTGCCGCTACCAAGGCCATCACGGCCGATCCGAGCTTTCAATCTGCTCTCGCCGCCGCTCTTACATCGATCATTGGCACTGGGGGTGCTAGTGCAAGTGCTGGACTCACCAAGTCATCGTCGGGAAGAGGCGAACAATCGTTGTTTCAATTGATGACGACAGCGGCTACTGCAAATAAAGGAAATGGATGTGGGACAAGCTTTTTGAACAACATTACGACAACGACGACGACCACAAGTAATTCACCACCAACGGGGAATATGGTGTTTGTTCCAACGAATCCGTTGCCGTTTTCGAATTCGAAAAGTGCGTCGGCTTCTCCAGGTGATCATATTGATCTTACCAATTAA 1836 45.48 MEAAAAFGRPRPVVKTEKPPLRDLSDNDRNSPSKQQQLLLVKRGNNHAKQEHDTTEDKTSCSSDQKDLSSIKLQEDQLESARAEMGEVREENQRLKQSLTQIMKDYEALKMQFLGIVGRDSKKVQDEDNDSNKEQQQHDDDQIELVSLSLGRFPVSEKKKIVDEKSSMNIVSGDHNEEAACKEALSLGLNCKFEREESMMAVAKEVDSPNSFDHESTKEEAGETNWPSKGGKTMRSVEDDVTPQNPPKRARVCVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCADDMSILITTYEGNHNHPLPASANAMASTTSAAASMLLSGSTTSATAASSLSTASNSLHGLNFYPNNSKPNYYLPNSNSSIISSTSPTHPTITLDLTSNPSSSPSNSSTHFGKFTSNFPNSRYPFTGQLDFGSSRNNVLSWNNGPLSYNRNNHPTTTTTTANNIYQNYIQQQQRNPATSLQHQQPPLPDTIAAATKAITADPSFQSALAAALTSIIGTGGASASAGLTKSSSGRGEQSLFQLMTTAATANKGNGCGTSFLNNITTTTTTTSNSPPTGNMVFVPTNPLPFSNSKSASASPGDHIDLTN* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17635968 17639320 + Chy12G219290.1 Chy12g01329 239110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01329 611 MobiDBLite consensus disorder prediction 1 72 - -
Chy12g01329 611 Gene3D WRKY domain 248 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy12g01329 611 MobiDBLite consensus disorder prediction 207 222 - -
Chy12g01329 611 Coils Coil 71 112 - -
Chy12g01329 611 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 49 606 - -
Chy12g01329 611 MobiDBLite consensus disorder prediction 122 142 - -
Chy12g01329 611 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 49 606 IPR044810 GO:0003700
Chy12g01329 611 MobiDBLite consensus disorder prediction 45 72 - -
Chy12g01329 611 MobiDBLite consensus disorder prediction 207 248 - -
Chy12g01329 611 SMART WRKY_cls 263 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy12g01329 611 SUPERFAMILY WRKY DNA-binding domain 256 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy12g01329 611 MobiDBLite consensus disorder prediction 15 29 - -
Chy12g01329 611 Pfam WRKY DNA -binding domain 264 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy12g01329 611 MobiDBLite consensus disorder prediction 122 141 - -
Chy12g01329 611 ProSiteProfiles WRKY domain profile. 258 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02515 Chy12g01329 CCT
Chy02g02515 Chy12g01329 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00439 Chy-Chr1:3151990 Chy12g01329 Chy-Chr12:17635968 5.41E-42 dispersed
Chy06g01098 Chy-Chr6:9215281 Chy12g01329 Chy-Chr12:17635968 1.72E-50 dispersed
Chy12g01329 Chy-Chr12:17635968 Chy04g02291 Chy-Chr4:27436313 5.05E-14 dispersed
Chy12g01329 Chy-Chr12:17635968 Chy02g02515 Chy-Chr2:28539679 6.48E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18888 PF03106 WRKY 5.80E-24 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01329 - - csv:101218344 1007.67