Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01330 ATGGGGAAGTCGCCAGGGAAATGGCTCAAGACCATCTTGTTTGGGAAGAAGTCTTCGAAATCTAATCTTTCTAAGGGCAGAGAGAGAAATGGAAATGAGAAAGAAGTATTGGCTTCTGCCAAGGCATCAGAAAATACTACTGTTATTAGTCATCCTGTAGCTTCACATCCAACCCCAAATACCATAGATACAAATGAAGGGGTGCCAAAAATTACCAACAATGAAGCAGCTAATGTGTTGCATGAAAGTTCGATATCAATTCCAGGAAATCAAGATGCGGAAGTTCAAGGATCTACCTGCCAAGATGCACCATCTGATCCTGAGAGAATCCGTGAGGAGGAGGCTGCAACTAAGGCTCAGGCTGCTTTTAGGGGTTATTTGGCTCGCCGAGCATTCCGGGCCCTCAAAGGTATTATTAGGTTGCAGGCGCTTATTCGTGGTCATTTGGTAAGGAGACAGGCTGCTGCAACCCTATGTTGTATGCTTGGAATTGTTAAGTTCCAGGCTATTGCTCGGGGAAGAAGAGTGAGGCTTTCTGATGTAGGCTTCGAAGTGCAGAACAAATGTAGATTAGTGCAGATACAGGATCAACCATTAGTGGATCCTGCTGGAGTAAGTCTCTCTACACGAATGGCAAAACTTTCTGCAAATGCTTTCACTATCAAGCTTGCTTCATCTACAACTTCAAAACCTATGCAACTCTATTTTGATACTGAAGATGAAAATTCAGTCTTGAAATGGTTAGAACGCTGGTCAAATTCTAGGTTTTGGAAACCAATTCCCCAAGTAAAAAAAGCCCCAGAGTCTAAAACTCAAAGAAGGCTGAGCACTGGTCAAACAGGAGAGGCACATACCGTGAGATCAAAGCGCACAAGGAGAGTTTCTTCAGCAAACAATGCAAACAATGATAGTACTGCAGTCCAATCATCTAGCGAATTTGAGAAACCGAAACGGAATTTTAGAAAGGTCTCTAGTCATTCAGCTGCCGAGCAGGTTCAGGAGAATCCCCAGATGGAGCTCGAAAAGGTCAAGCGTAGTCTGAGAAAGGTCCATAACCCCGTTGTTGAGAATCCTGCCCAAACAGAAGTTGATGCTGAGAAGCCTAAGGAAAGTTTGGAGAAGGCTTCTAATGGTCTAAGCCGTGACCTTTTGGCAAGAGGTACTAGTAATTCTTCTGAGAAGATGAAAAAAGAGGCACTCTCAACAAATCCTGTCCAGCCTGATTTGGAGACAACACCTGAACAGTTACCAACGAAAGAGATCGTTAATGTACCTAATACTGATCCAGTTGTAGATTCACTGCCTTTGATTGAGAGCAGTAACATAGATAAGAGCGTTACAGGAGATGAGGCTGCCGTGGAGACTAAGCCTCTGACAGAGATCTACCCTCAAGATGAAATCAACCCATTACCAAATGGGGAATCGAACCACAAAGAAGATTATACTAACAACGAGAATCCGAAATCTGGTAGGAAATCTTCTACTCCAGCCAAGCAAGATCGAGTAGAGAATGGGTTGCAACACAGTCCAACCTTACCTAGCTACATGGCAGCAACTGAATCTGCAAAGGCAAAACTGAGAGCACAAGGATCTCCAAGATTTGGACAGGATAGTGAAAGAAGTAACCTCAACCGACGTCATTCTTTACCGTCGCCCACTAATGCTAAAATTAGCTCACAGTCTCCACGAACACAAAGACTCACTCAAGCGGGTGGCAAAGGAGGAAATAGAAATGACAAGGCACTTCTGGGATCAAGAGATGGAAATGGAAAGGTAATCCAAGCAGACTGGAGAAGTAGAATTTTCCTTGTGGGTTACGTAAAGGAAAAGGAATTTCGTTTTCTCCATGCAGACTCTCGGTTTCAGACGCCTGGGGGATATACCAACGAGGGCCACGACCTTCTGGACCCAAGCAAATGGTCTCCTCAGAAAAAACTTAACCTTCCAGGTCTTTCTTCTCCTTCCCTTTCCTTCTCTCTTTGCAGCTTCTGCTTAAGAAATCCTTACAGGTACTCTCGATTTCCTCTTGGATTTGATTCATTTAATTTTGATATTTTCTTTTTATACTGGAAACGAAATTTGAGGACGAATTCTCGTCTGATTTTCTTCCCATTCATCCTCTGTTCATTGCTCGGTGTAATTCAAACAGTAGTCGATAGAGCCTTGGATGACCCGAATATCAGATGTGGTTGTGCTTGTGTTGATACGAATGGAGATGGTAAATGTGAGAAAGTTTGTGGGCTAGAGTACTCAAGTTCGTTACAAGCATTAAACTGCCCCATTCCAAGTCCTCCACAATGGGCTCCTATATTGCAAATGCCTGCTCCTGATTTCCGGGCTGTGAGAACAGATTTTTTTCCATATACAGACTTGCCAAATGAATCATGCAGGGCGTCAATGTCATGTCCTGTTACTATGCTTTTCACTGGAAAGAATCGCTCTCTTGGAAATATTCTGGCTGGAAATATGGTCCCAAGTTCTTTGTTTTGGAATTCTTCTGATGTTATGAATGCTGCATCTCTTAACGTTTTGGGATCAGAAACGAAGCCTACAACAGACAATTATCTTGATTTCGCTTTCTTTTCAAATCTTCCTTTATATTATGTGCAACGTCAGTGTGTGACAGGCTCGACATTGTCAATTCCTCTTTCACTATTCTCTCTTGAAAACAAACAAAAAGTTGCATGTGTTCAAGGCCTACAATTGTGGCGCAATAGTGCTTCACAGGTGAATGATGAGATATACAAAGGTTACGTAAACGGAAATCCCGAGGGGAAAATCAATGAGATTCTTTCAGGCTTTGATTTCTTAAATTCGGATAGGAACAATTTTAATGTGACTATATGGTATAATTCATCTTATAGTGGTGGCACTGGCTCGAACGTTCTGTTGCGGGTGGCACGCTCGGTTAATCTGGTATCCAATGGCTATCTTAAGTTTAAGTTAGGAGCACGCACAGAGATGCCCTTTCAGTTTGTCAAAGGAATGCCGAAACATGAGACAAAGATGAAGGCGGATTTTTCTTCTCAACTTGGTGCACTATTTTTTACGTGGGTCATCCTCCAGCCTTTTCCAGTTATCTTGACATCGTTGGTAACTGAGAAGCAACAGAAACTGAGAATCATGATGAAAATGCATGGGCTTGGTGATGGGCCTTATTGGGCGATTTCATATGCTTATTTTCTTGCAATTTATTCAGTATACATGTTTTTTTTTGTGATGTTTGGTTCAGTTGTAGGGCTAAAGTTTTTTACAATGAATGACTACAGTATCCAGTTAGTGTTTTATCTCTTCTTTATAAATTTGCAAGTCTCCATTGCCTTTCTAATGGCTAGCACGTTTTCAGATGTCAAGACAGCTGAAGTTTCGGCATATATTTGTGTCTTCGGAACAGGGCTCTTAGGTGGATTTCTCTTCCAGTTTTTTATTGAAGATCCTTCATTCCCACATGGCTGGATTATATTTATGGAGTTATATCCTGGATTTTTGCTATATCGTGGATTGTATGAGCTCGCATTTTATTCTATCAGTGGGAATCTAATAGGGACTTCTGGGATGCGATGGGGAGATTTGACTGATAGTACCAATGGAATGAGAGAAGTTTTTATCATTATGCTTTTTGAGTGGATAGTGGTGCTTCTAGTTGGATATTATATCGATCAAGCTTTATCATCGGGAAGTTGGAAGCATCCATTGTTTTTCCATCAAAGACACGACAAAAATCTTGCACCTCAGAATCTTGTTCCGGAGAGGCAAGAATCAAAAGTTATGGTTCAGATTGATAAACCTGATGTCAGAGTAGAGAGGGAGAAGGTCGAACAGTTGCTAAAGGATAGACATCCAAGTCATGGCATCATATGTGACCATATCAAAAAGGTGTATCCAGGAAGGGATGGAAACCCCGAGAAGTTTGCAGTTAAAGGACTGTCTCTTGCTATAGACCGAGGAGAATGCTTTGGGATGCTAGGTCCTAATGGTGCTGGAAAAACCTCCTTTATCAGTATGATGATTGGTCTTACAAAACCAACCGCTGGAACAGCCTTTGTTGAAGGTCTGGACATAAGGACTGAGATGAATGGCATATATGCAAGCATGGGCGTTTGTCCACAGCACGACCTGCTATGGGAAACCTTAACCGGAAGGGAACACCTACTCTTTTATGGCAGACTGAAGAACTTAGAAGGTTCTGCTTTAGTACAAGCAGTGGAAGAATCTCTCAAGGATGTCAACCTCTTCAAAGGAGGAGTAGCAGACAAACAAGCTGGGATGTACAGTGGAGGTATGAAGAGGAGGCTTAGTGTCGCTATATCACTAATTGGGGATCCTAAAGTTGTTTATATGGATGAGCCAAGCACTGGCCTAGATCCAGCTTCAAGAAAAACTTTATGGAATGCTGTGAAGCGTGCAAAGAAAGATCGAGCAATCATCCTTACTACACATTCTATGGAAGAGGCAGAAGTCTTATGCGATCGGATAGGAATTTTTGTAGATGGATGCCTCCAGTGTGTTGGACATCCAAAAGAGCTTAAAGCCAGATATGGTGGGGTTTATGTATTTACAATGACAACATCCTCTGATCATGAGGGATATGTTGAGGACATGGTGAAGCGATTAGCCTCTGGAGCAAAGAAGATATACCATTTATCTGGAACACAAAAATTTGAGCTTCCAAAACATGAGGTTCGGATTGCTGATGTGTTTTTAGCAGTTGAAGAGGCCAAAAGCAGATTTACGGTTTTGGCTTGGGGTTTGTCTGATACCACTTTAGAAGACGTCTTTATCAAAGTTGCTAATTCAGCCAAGTCTTCACATACGCTTTCTTGA 4824 42.08 MGKSPGKWLKTILFGKKSSKSNLSKGRERNGNEKEVLASAKASENTTVISHPVASHPTPNTIDTNEGVPKITNNEAANVLHESSISIPGNQDAEVQGSTCQDAPSDPERIREEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAAATLCCMLGIVKFQAIARGRRVRLSDVGFEVQNKCRLVQIQDQPLVDPAGVSLSTRMAKLSANAFTIKLASSTTSKPMQLYFDTEDENSVLKWLERWSNSRFWKPIPQVKKAPESKTQRRLSTGQTGEAHTVRSKRTRRVSSANNANNDSTAVQSSSEFEKPKRNFRKVSSHSAAEQVQENPQMELEKVKRSLRKVHNPVVENPAQTEVDAEKPKESLEKASNGLSRDLLARGTSNSSEKMKKEALSTNPVQPDLETTPEQLPTKEIVNVPNTDPVVDSLPLIESSNIDKSVTGDEAAVETKPLTEIYPQDEINPLPNGESNHKEDYTNNENPKSGRKSSTPAKQDRVENGLQHSPTLPSYMAATESAKAKLRAQGSPRFGQDSERSNLNRRHSLPSPTNAKISSQSPRTQRLTQAGGKGGNRNDKALLGSRDGNGKVIQADWRSRIFLVGYVKEKEFRFLHADSRFQTPGGYTNEGHDLLDPSKWSPQKKLNLPGLSSPSLSFSLCSFCLRNPYRYSRFPLGFDSFNFDIFFLYWKRNLRTNSRLIFFPFILCSLLGVIQTVVDRALDDPNIRCGCACVDTNGDGKCEKVCGLEYSSSLQALNCPIPSPPQWAPILQMPAPDFRAVRTDFFPYTDLPNESCRASMSCPVTMLFTGKNRSLGNILAGNMVPSSLFWNSSDVMNAASLNVLGSETKPTTDNYLDFAFFSNLPLYYVQRQCVTGSTLSIPLSLFSLENKQKVACVQGLQLWRNSASQVNDEIYKGYVNGNPEGKINEILSGFDFLNSDRNNFNVTIWYNSSYSGGTGSNVLLRVARSVNLVSNGYLKFKLGARTEMPFQFVKGMPKHETKMKADFSSQLGALFFTWVILQPFPVILTSLVTEKQQKLRIMMKMHGLGDGPYWAISYAYFLAIYSVYMFFFVMFGSVVGLKFFTMNDYSIQLVFYLFFINLQVSIAFLMASTFSDVKTAEVSAYICVFGTGLLGGFLFQFFIEDPSFPHGWIIFMELYPGFLLYRGLYELAFYSISGNLIGTSGMRWGDLTDSTNGMREVFIIMLFEWIVVLLVGYYIDQALSSGSWKHPLFFHQRHDKNLAPQNLVPERQESKVMVQIDKPDVRVEREKVEQLLKDRHPSHGIICDHIKKVYPGRDGNPEKFAVKGLSLAIDRGECFGMLGPNGAGKTSFISMMIGLTKPTAGTAFVEGLDIRTEMNGIYASMGVCPQHDLLWETLTGREHLLFYGRLKNLEGSALVQAVEESLKDVNLFKGGVADKQAGMYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKTLWNAVKRAKKDRAIILTTHSMEEAEVLCDRIGIFVDGCLQCVGHPKELKARYGGVYVFTMTTSSDHEGYVEDMVKRLASGAKKIYHLSGTQKFELPKHEVRIADVFLAVEEAKSRFTVLAWGLSDTTLEDVFIKVANSAKSSHTLS* 1608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17646177 17659891 + Chy12G219300.1 Chy12g01330 239111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01330 1607 MobiDBLite consensus disorder prediction 382 413 - -
Chy12g01330 1607 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1285 1522 IPR003439 GO:0005524
Chy12g01330 1607 MobiDBLite consensus disorder prediction 362 376 - -
Chy12g01330 1607 MobiDBLite consensus disorder prediction 21 35 - -
Chy12g01330 1607 ProSiteProfiles IQ motif profile. 136 158 IPR000048 GO:0005515
Chy12g01330 1607 MobiDBLite consensus disorder prediction 487 516 - -
Chy12g01330 1607 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Chy12g01330 1607 Pfam ABC transporter 1307 1451 IPR003439 GO:0005524
Chy12g01330 1607 Gene3D - 1275 1545 IPR027417 -
Chy12g01330 1607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1286 1514 IPR027417 -
Chy12g01330 1607 Pfam ABC-2 family transporter protein 909 1216 - -
Chy12g01330 1607 MobiDBLite consensus disorder prediction 19 61 - -
Chy12g01330 1607 MobiDBLite consensus disorder prediction 545 572 - -
Chy12g01330 1607 MobiDBLite consensus disorder prediction 292 313 - -
Chy12g01330 1607 CDD ABC_subfamily_A 1285 1510 - -
Chy12g01330 1607 MobiDBLite consensus disorder prediction 441 587 - -
Chy12g01330 1607 Gene3D - 110 158 - -
Chy12g01330 1607 MobiDBLite consensus disorder prediction 263 413 - -
Chy12g01330 1607 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 690 1606 - -
Chy12g01330 1607 Pfam IQ calmodulin-binding motif 136 153 IPR000048 GO:0005515
Chy12g01330 1607 Pfam IQ calmodulin-binding motif 114 133 IPR000048 GO:0005515
Chy12g01330 1607 Pfam Protein of unknown function (DUF4005) 484 577 IPR025064 -
Chy12g01330 1607 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 690 1606 IPR026082 GO:0016021|GO:0055085|GO:0140359
Chy12g01330 1607 SMART AAA_5 1315 1498 IPR003593 -
Chy12g01330 1607 ProSitePatterns ABC transporters family signature. 1424 1438 IPR017871 GO:0005524
Chy12g01330 1607 MobiDBLite consensus disorder prediction 337 351 - -
Chy12g01330 1607 MobiDBLite consensus disorder prediction 39 61 - -
Chy12g01330 1607 SMART iq_5 111 133 IPR000048 GO:0005515
Chy12g01330 1607 SMART iq_5 134 155 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01330 - - - csv:101218105 1732.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g02513 Chy12g01330 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02513 Chy-Chr2:28528977 Chy12g01330 Chy-Chr12:17646177 2.61E-81 dispersed
Chy03g01398 Chy-Chr3:16745513 Chy12g01330 Chy-Chr12:17646177 6.98E-16 dispersed
Chy04g00437 Chy-Chr4:3890393 Chy12g01330 Chy-Chr12:17646177 7.79E-07 dispersed
Chy08g00463 Chy-Chr8:11349470 Chy12g01330 Chy-Chr12:17646177 1.23E-12 dispersed
Chy08g00464 Chy-Chr8:11355644 Chy12g01330 Chy-Chr12:17646177 1.48E-38 dispersed
Chy12g01330 Chy-Chr12:17646177 Chy02g01155 Chy-Chr2:8277308 2.32E-10 dispersed
Chy02g02052 Chy-Chr2:24705073 Chy12g01330 Chy-Chr12:17646177 3.77E-17 transposed
Chy06g01843 Chy-Chr6:22183645 Chy12g01330 Chy-Chr12:17646177 3.13E-11 transposed
Chy07g00591 Chy-Chr7:5294247 Chy12g01330 Chy-Chr12:17646177 3.24E-10 transposed
Chy12g00603 Chy-Chr12:8573237 Chy12g01330 Chy-Chr12:17646177 1.38E-08 transposed
Chy12g01330 Chy-Chr12:17646177 Chy02g02512 Chy-Chr2:28520552 0 wgd
Chy12g01330 Chy-Chr12:17646177 Chy09g00260 Chy-Chr9:2136109 1.14E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g522 Blo04g00762 Blo16g00192 . . . Bpe13g00281 Bma06g00182 . . . . Cma11g00159 . . Sed14g0146 . Cpe04g01511 Bhi02g00339 Tan09g2144 Cmetu08g1425 . Hepe09g0133 . . Cla06g01603 Cam06g1777 Cec06g1828 Cco06g1836 Clacu06g1739 Cmu06g1684 Cre06g2500 . . Cone13ag0083 . Lsi02g00306 . Chy12g01330 . . . Bda11g01692 Bda14g00842 . Bpe15g00611 Bma03g00819 . . . Cmo11g00151 . . . . . . Bhi08g01403 . . . Hepe07g2288 . . . . . . . . . Lsi06g01481 Csa01g00220 Chy02g02513 Cme02g01899
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g01330 Chy_Chr12 FPKM 12.008666 10.863615 11.696424 12.212569 11.102341 9.812384 11.095806 15.994973 16.628435 13.652528