Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01348 ATGCCGCCGAGACGATATGCTTTTGGACGGGCCGATGAGGCCACCCACCCCGACTCCATTCGTGCTACCTTAGCTGAGTTCATTTCCACTTTCATCTTCGTCTTTGCTGGCGAAGGCTCCGTTCTCGCTCTTGATAAAATTTTCAGGCCAGCGGATTATGGAAGTTACGGCCGAGGAGGGTACAGTTATGGTCACGGTTATGGTAGAAAGGGGGCTGACACAGGCAGAGCTGCGTCGGATTTAGTAGTGATAGCGATAGCACACGCGTTTGCGCTGTTCTCGGCTGTGGCAGCGAGCATCAACATATCGGGTGGGCATGTGAATCCTGCAGTAACTTTTGGGGCCCTTATCGGAGGGAGGATCTCTCTTATTCGTGCACTCTTCTATTGGGTTGCACAGATTTTGGGTGCCATTATCGCTTCACTTCTCTTGAGACTTGCAACGGGTGGCATGAGGCCTATGGGGTTCTTTGTTTCATCAGGAGTATCAGAATTGCACGGGTTTCTACTAGAGATAATCCTTACATTTGCTTTGGTCTACACAGTTTACGCAACAGCAATAGACCCAAAGAGGGGCAGTTTGGGAACAATAGCACCACTGGCAATCGGGTTAATAGTCGGGGCCAATATTCTGGTGGGTGGGGCCTTCGATGGGGCCTGCATGAACCCAGCAAGGGCATTTGGGCCTTCTTTAGTGGGCTGGAGATGGGACAATCATTGGATCTATTGGATTGGCCCATTAATCGGAGGTGGGCTTGCGGCCCTTGTATATGAGTACTTGGTCATTCCTGTTGAACCTCCTCTACATACTCACCAGCCCTTGGCTCCCGAGGATTACTGA 840 51.07 MPPRRYAFGRADEATHPDSIRATLAEFISTFIFVFAGEGSVLALDKIFRPADYGSYGRGGYSYGHGYGRKGADTGRAASDLVVIAIAHAFALFSAVAASINISGGHVNPAVTFGALIGGRISLIRALFYWVAQILGAIIASLLLRLATGGMRPMGFFVSSGVSELHGFLLEIILTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLIGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17763468 17765359 - Chy12G219480.1 Chy12g01348 239129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01348 279 Pfam Major intrinsic protein 14 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy12g01348 279 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy12g01348 279 PRINTS Major intrinsic protein family signature 240 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy12g01348 279 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy12g01348 279 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy12g01348 279 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy12g01348 279 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy12g01348 279 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Chy12g01348 279 PANTHER - 3 49 - -
Chy12g01348 279 PANTHER - 72 279 - -
Chy12g01348 279 PANTHER AQUAPORIN-8 3 49 IPR034294 -
Chy12g01348 279 PANTHER AQUAPORIN-8 72 279 IPR034294 -
Chy12g01348 279 SUPERFAMILY Aquaporin-like 13 270 IPR023271 -
Chy12g01348 279 Gene3D Glycerol uptake facilitator protein. 5 265 IPR023271 -
Chy12g01348 279 TIGRFAM MIP: MIP family channel proteins 25 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy12g01348 279 CDD MIP 21 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00756 Chy-Chr9:10013912 Chy12g01348 Chy-Chr12:17763468 4.70E-93 dispersed
Chy09g01079 Chy-Chr9:13139000 Chy12g01348 Chy-Chr12:17763468 1.43E-78 dispersed
Chy12g01348 Chy-Chr12:17763468 Chy08g00831 Chy-Chr8:15825011 3.53E-34 dispersed
Chy12g01348 Chy-Chr12:17763468 Chy04g02024 Chy-Chr4:25910361 3.24E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01348 K09873 - csv:101208863 510.76