Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01365 ATGTCTTCGTCCGGTGGCAACTCTGGCGACGGAGCTGGCGGTGGCGTCGCCTCCCATCCCCCTCAGCTCTACTTCTGCTATACCTGCAATCGTACGGTAACAATTACTCCCTCATCATCCTCCGATCTTTTATGCCCCAACTGCAACGATAGCTTCGTTGAAGAAATGGAAAGTCCAAACCCTAACCCTAGCCCTGTTCCCAATCCTTTCCTCTCCTTCACATCCGAGGCATTTCCACCTTTCAGCACGGGTGGCGGTGGAAATGGCGGTTTCCCTATCATATTCTCTACAACATCTTCATCTGGTGGCATTGGCGGTGGGGGTTCTATGATGAATGATCTATCAGCGCTATTGGGAGGTGGTTCTCTTCGATCGTCGTCGTTACAAAACCCTGACGGTTTTAATCCCTTGCTTTTTCTCCAGAACTATCTTCAAAGCGCTAATGTTCAATTGGTAATCCAAAACGCTTCGGGAGAGGCGTTTCATCCCCCTTCCAATTTCAATCTTGGTGACTACTTCTTTGGCCCCGGCCTTGAGCAGTTGATTCAACAGCTTGCTGAAAACGATCCGAACCGTTATGGAACCCCTCCCGCTTCAAAGTCGGCCATTGAAGGACTTCCAGATATCAAAATTACGGAGGAATTGTTGGCTACGGATTCTTCACAGTGCGCTGTGTGTAAGGATACGTTTGAGCTTGACGAGGTGGCAAAACTGATGCCTTGCAAACACATATATCATGCAGATTGTATAATTCCTTGGTTGGAATTGCATAATTCTTGTCCAGTATGTCGATATGAATTGCCCACAGATGATCCCGATTACGAGCAAAGAACTCGTGGGTCTTCAGCTCCTAATCGGAGTCAAAGTGAAAGTCAATCCTTTGGGGATTCTTCCACTGGTGGGGAAAATGTTGTCGGAAGCGATCCTAATTCTGATGAGAACTCGCAGACTCAACAGATGGGAGAGCGGAGGGTTAGGAGGATAGCTTTTCCTTGGCCCTTCAGAGGATTTGGTTCAGGTGCTGAGACTAGTAATAGTGGAGGTGGCAACAACAGTGGAAATAACGACGAACCTAGCTCCAGAAATAGGGGAAGCCAGGGTTCTTCGGAGCCAATGCAGGAAGATCTCGATTGA 1134 48.24 MSSSGGNSGDGAGGGVASHPPQLYFCYTCNRTVTITPSSSSDLLCPNCNDSFVEEMESPNPNPSPVPNPFLSFTSEAFPPFSTGGGGNGGFPIIFSTTSSSGGIGGGGSMMNDLSALLGGGSLRSSSLQNPDGFNPLLFLQNYLQSANVQLVIQNASGEAFHPPSNFNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEGLPDIKITEELLATDSSQCAVCKDTFELDEVAKLMPCKHIYHADCIIPWLELHNSCPVCRYELPTDDPDYEQRTRGSSAPNRSQSESQSFGDSSTGGENVVGSDPNSDENSQTQQMGERRVRRIAFPWPFRGFGSGAETSNSGGGNNSGNNDEPSSRNRGSQGSSEPMQEDLD* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17880222 17881355 - Chy12G219650.1 Chy12g01365 239146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01365 377 Pfam zinc-ribbon 22 56 IPR039525 GO:0061630
Chy12g01365 377 MobiDBLite consensus disorder prediction 339 377 - -
Chy12g01365 377 SMART ring_2 223 263 IPR001841 -
Chy12g01365 377 Pfam Ring finger domain 222 264 IPR001841 -
Chy12g01365 377 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
Chy12g01365 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 270 IPR013083 -
Chy12g01365 377 MobiDBLite consensus disorder prediction 278 322 - -
Chy12g01365 377 SUPERFAMILY RING/U-box 211 271 - -
Chy12g01365 377 MobiDBLite consensus disorder prediction 273 377 - -
Chy12g01365 377 CDD RING-H2_RNF126_like 222 264 - -
Chy12g01365 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 15 344 - -
Chy12g01365 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 15 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01365 - - K11982 csv:101205252 672.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01908 Chy-Chr1:24355688 Chy12g01365 Chy-Chr12:17880222 8.75E-24 dispersed
Chy04g02163 Chy-Chr4:26740824 Chy12g01365 Chy-Chr12:17880222 1.27E-33 dispersed
Chy05g00006 Chy-Chr5:45088 Chy12g01365 Chy-Chr12:17880222 1.84E-37 dispersed
Chy08g00547 Chy-Chr8:13019722 Chy12g01365 Chy-Chr12:17880222 4.45E-33 dispersed
Chy09g00172 Chy-Chr9:1458428 Chy12g01365 Chy-Chr12:17880222 9.51E-35 dispersed
Chy09g00248 Chy-Chr9:2041208 Chy12g01365 Chy-Chr12:17880222 1.46E-24 dispersed
Chy10g00531 Chy-Chr10:11884438 Chy12g01365 Chy-Chr12:17880222 8.35E-41 dispersed
Chy10g01009 Chy-Chr10:15480248 Chy12g01365 Chy-Chr12:17880222 2.58E-23 dispersed
Chy11g01214 Chy-Chr11:18323587 Chy12g01365 Chy-Chr12:17880222 1.82E-36 dispersed
Chy12g01365 Chy-Chr12:17880222 Chy12g01367 Chy-Chr12:17887206 1.01E-16 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g964 . . . . Bpe12g00632 . . Bma12g01260 Cmo13g00999 . . . . . . Cpe20g00175 . . . . . . . . . . . . . . . . . . . . Csa01g00747 Chy12g01365 Cme12g01797 Blo13g00102 . . . Bpe07g01067 . . . . . . Cma13g00964 . . Car18g00086 Cpe09g01094 . Bhi08g01341 Tan05g2147 . Lac10g0321 . . . Cla01g01465 Cam01g1533 Cec01g1573 Cco01g1620 Clacu01g1557 Cmu01g1447 Cre01g1369 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004117 1 3 3 1 3 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 0 1 5 3 0 44