Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01375 ATGCTGGCTGATCTCTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAACGAAAACGACGACCCGCGGGTACCCCAGACCCAGATGCTGAGGTGGTTTCTCTCTCTCCAAAAACCCTATTGGAATCAGATCGTTACGTATGTGAGATCTGCAATCAAGGGTTTCAGAGAGATCAAAATCTACAGATGCATCGACGTCGACACAAGGTACCATGGAAGCTGTTGAAAAGAACGGAAACAACAACCGTAGTGAGGAAACGGGTGTTTGTTTGCCCCGAACCCAGCTGTTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTAGGAATAAAGAAGCACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAAAAATGTTCTAAAGGATATGCTGTTCAATCTGATTACAAAGCCCATCTCAAAACTTGTGGAACTAGAGGCCATTCTTGTGATTGTGGTCGAGTTTTCTCCAGGGTGGAGAGTTTCATAGAACATCAAGATAATTGCAAACTGGGTCATCATCATCAACAGCAACAATCAGAACAAAAAATTCCATGTTTATCAAGAACAGCTTCAAGTCCAACTCCAAGTCCTTCTTCAGATACAAATTTCAGCTTCTTAAACCAAAACCAAAACCCAAAATTTACTTCAACTCATCATCATCATCATCATAGCCATGGATCTGACAAATATTCGAAAAAAACAACAATAATTCCTCAAAGAATTATTGGCCATAATCATCAAAATCTAGACCTTCAACTTTCCACCAATTCAACAACTTCAATTCACGTTTCAGTTTCTCCGAAAAGACATGAAAATTACTCAACCCATTTGCAACTTTCCATTGGTTCTTGCAATTATGGTTTTTTGAAGCTGAAAGAAGAAGCTAAAGAGCAAATGAGAATGGCCATGGAAGAGAAAGCAATGGCTGAAGAAGCAAGAAATGAAGCTAAGAAGCAAATTGAAATGGCTGAAAAAGAGTTAGTGAATGCCAAGAGAATGAGACAACAAGCACAAGCTGAGTTACAAAGAGCACTTGTTTTGAAAGAACATGCCATCAAGAAAATCAATTCTACTATCCTCCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCCCTTCCCTAAAATTTGA 1182 39.0 MLADLSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTETTTVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDNCKLGHHHQQQQSEQKIPCLSRTASSPTPSPSSDTNFSFLNQNQNPKFTSTHHHHHHSHGSDKYSKKTTIIPQRIIGHNHQNLDLQLSTNSTTSIHVSVSPKRHENYSTHLQLSIGSCNYGFLKLKEEAKEQMRMAMEEKAMAEEARNEAKKQIEMAEKELVNAKRMRQQAQAELQRALVLKEHAIKKINSTILQITCQVCRQHFHPFPKI* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17952767 17955100 + Chy12G219750.1 Chy12g01375 239156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01375 393 SMART c2h2final6 100 130 IPR013087 -
Chy12g01375 393 SMART c2h2final6 136 163 IPR013087 -
Chy12g01375 393 SMART c2h2final6 57 79 IPR013087 -
Chy12g01375 393 MobiDBLite consensus disorder prediction 193 230 - -
Chy12g01375 393 PANTHER OS03G0310200 PROTEIN 14 388 IPR039288 GO:0009630
Chy12g01375 393 MobiDBLite consensus disorder prediction 23 43 - -
Chy12g01375 393 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 14 388 - -
Chy12g01375 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Chy12g01375 393 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Chy12g01375 393 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Chy12g01375 393 Coils Coil 308 370 - -
Chy12g01375 393 MobiDBLite consensus disorder prediction 188 248 - -
Chy12g01375 393 Gene3D Classic Zinc Finger 35 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01375 Chy-Chr12:17952767 Chy12g01597 Chy-Chr12:19527270 7.27E-169 dispersed
Chy12g01375 Chy-Chr12:17952767 Chy03g01477 Chy-Chr3:17237665 7.86E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18891 None None None None Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01375 K25871 - csv:101210748 706.827