Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01379 ATGGCTTTGGTCCGTGATCGCCGCCACCTCAACCTCCGTCTCCCCGACCTCTCCGACTGCCGTCCTCGCTTCCCCCTTCCCCTCCCTCCCTCCTCTGCTCCCCCTGCTCCCCCTGCTCCTGCCGCTCCCTCCGCCATCTCCTCCTCTGACCTCGACAAGCTCCAAGTCCTCGGTCACGGTAACGGCGGCACCGTCTACAAAGTCCGTCACAAACGCACCTCCACTACTTACGCTCTCAAGGTCGTCCACGGCGACTGCGACCCCACCGTTCGTCGCCAAGTTTTCAGAGAGATGGAGATTCTTCGTCGGACTGATTCTCCTTATGTTGTTCAGTGTCATGGAATCTTTGAGAAACCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTTGGATCTCTTGATTCGTTATTGAAGAAGAGCTCGACTTTGTCTGAAGCGACGCTGGCTCATGTGTCGCGTCAGGTTCTTAATGGTCTTCATTATCTTCACTCGCATAAAATCATTCATCGTGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGCAATTCTTACGTCGGAACTTGTGCTTATATGAGTCCAGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTTTGCCGGAGATATTTGGAGTTTGGGCCTTACTCTTCTAGAACTTTATTTAGGTCATTTCCCGTTTCTTCCGGCCGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCGAAGCTGCCAGAGGATGCATCGGAGGAGTTTCGGAGCTTTGTTGAGTGTTGTTTGCAGAAGGAATCGAGTAAAAGATGGACGGCGGCACAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCATAG 960 50.31 MALVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPPAPPAPAAPSAISSSDLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKSSTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGFAGDIWSLGLTLLELYLGHFPFLPAGQRPDWATLMCAICFGEPPKLPEDASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRS* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17994198 17995157 + Chy12G219790.1 Chy12g01379 239160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01379 319 Pfam Protein kinase domain 53 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01379 319 Gene3D Transferase(Phosphotransferase) domain 1 133 319 - -
Chy12g01379 319 ProSiteProfiles Protein kinase domain profile. 51 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01379 319 MobiDBLite consensus disorder prediction 23 47 - -
Chy12g01379 319 MobiDBLite consensus disorder prediction 23 42 - -
Chy12g01379 319 ProSitePatterns Protein kinases ATP-binding region signature. 57 80 IPR017441 GO:0005524
Chy12g01379 319 SUPERFAMILY Protein kinase-like (PK-like) 50 313 IPR011009 -
Chy12g01379 319 CDD PKc_MAPKK_plant_like 50 312 - -
Chy12g01379 319 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 315 - -
Chy12g01379 319 SMART serkin_6 51 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01379 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Chy12g01379 319 Gene3D Phosphorylase Kinase; domain 1 40 131 - -
Chy12g01379 319 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01379 K20604 MKK9; mitogen-activated protein kinase kinase 9 [EC:2.7.12.2] - csv:101203133 580.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00712 Chy-Chr4:8666146 Chy12g01379 Chy-Chr12:17994198 8.14E-98 dispersed
Chy05g01408 Chy-Chr5:18086590 Chy12g01379 Chy-Chr12:17994198 6.50E-62 dispersed
Chy12g01379 Chy-Chr12:17994198 Chy09g00979 Chy-Chr9:12492862 1.11E-38 dispersed
Chy12g01379 Chy-Chr12:17994198 Chy05g01452 Chy-Chr5:18365650 1.11E-79 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g01452 CCT 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.3 2.1e-125 445.7
Chy02g01249 CCT 28 309 MAP Kinase Kinase Gene Family AT4G26070 70.9 3.1e-116 415.2
Chy05g01408 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 55.4 3.8e-106 381.7
Chy02g01249 CCT 1 309 MAP Kinase Kinase Gene Family AT4G29810 70.4 1.5e-126 449.5
Chy05g01452 CCT 3 325 MAP Kinase Kinase Gene Family AT4G29810 63.2 1.1e-118 423.3
Chy05g01408 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 2.1e-109 392.5
Chy04g01430 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 78.9 4.1e-226 780.8
Chy04g00712 . 1 360 MAP Kinase Kinase Gene Family AT1G51660 69.5 2.2e-136 482.3
Chy12g01379 . 49 316 MAP Kinase Kinase Gene Family AT1G51660 55.6 1.3e-83 307.0
Chy04g00712 . 1 360 MAP Kinase Kinase Gene Family AT3G21220 63.7 2.1e-128 455.7
Chy12g01379 . 47 314 MAP Kinase Kinase Gene Family AT3G21220 54.5 3.2e-84 308.9
Chy05g01408 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 83.7 8.1e-168 586.6
Chy05g01452 CCT 1 340 MAP Kinase Kinase Gene Family AT5G56580 55.6 1.5e-108 389.8
Chy02g01249 CCT 7 345 MAP Kinase Kinase Gene Family AT5G56580 55.0 9.8e-105 377.1
Chy12g01379 . 1 316 MAP Kinase Kinase Gene Family AT1G18350 63.6 1.8e-107 386.0
Chy12g01379 . 1 300 MAP Kinase Kinase Gene Family AT3G06230 51.3 1.1e-80 297.0
Chy12g01379 . 1 312 MAP Kinase Kinase Gene Family AT1G73500 65.7 3.8e-113 404.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71643 PF00069 Pkinase 1.40E-65 CL0016 Chy PK