Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01379 ATGGCTTTGGTCCGTGATCGCCGCCACCTCAACCTCCGTCTCCCCGACCTCTCCGACTGCCGTCCTCGCTTCCCCCTTCCCCTCCCTCCCTCCTCTGCTCCCCCTGCTCCCCCTGCTCCTGCCGCTCCCTCCGCCATCTCCTCCTCTGACCTCGACAAGCTCCAAGTCCTCGGTCACGGTAACGGCGGCACCGTCTACAAAGTCCGTCACAAACGCACCTCCACTACTTACGCTCTCAAGGTCGTCCACGGCGACTGCGACCCCACCGTTCGTCGCCAAGTTTTCAGAGAGATGGAGATTCTTCGTCGGACTGATTCTCCTTATGTTGTTCAGTGTCATGGAATCTTTGAGAAACCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTTGGATCTCTTGATTCGTTATTGAAGAAGAGCTCGACTTTGTCTGAAGCGACGCTGGCTCATGTGTCGCGTCAGGTTCTTAATGGTCTTCATTATCTTCACTCGCATAAAATCATTCATCGTGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGCAATTCTTACGTCGGAACTTGTGCTTATATGAGTCCAGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTTTGCCGGAGATATTTGGAGTTTGGGCCTTACTCTTCTAGAACTTTATTTAGGTCATTTCCCGTTTCTTCCGGCCGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCGAAGCTGCCAGAGGATGCATCGGAGGAGTTTCGGAGCTTTGTTGAGTGTTGTTTGCAGAAGGAATCGAGTAAAAGATGGACGGCGGCACAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCATAG 960 50.31 MALVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPPAPPAPAAPSAISSSDLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKSSTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGFAGDIWSLGLTLLELYLGHFPFLPAGQRPDWATLMCAICFGEPPKLPEDASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRS* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17994198 17995157 + Chy12G219790.1 Chy12g01379 239160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01379 319 Pfam Protein kinase domain 53 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01379 319 Gene3D Transferase(Phosphotransferase) domain 1 133 319 - -
Chy12g01379 319 ProSiteProfiles Protein kinase domain profile. 51 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01379 319 MobiDBLite consensus disorder prediction 23 47 - -
Chy12g01379 319 MobiDBLite consensus disorder prediction 23 42 - -
Chy12g01379 319 ProSitePatterns Protein kinases ATP-binding region signature. 57 80 IPR017441 GO:0005524
Chy12g01379 319 SUPERFAMILY Protein kinase-like (PK-like) 50 313 IPR011009 -
Chy12g01379 319 CDD PKc_MAPKK_plant_like 50 312 - -
Chy12g01379 319 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 315 - -
Chy12g01379 319 SMART serkin_6 51 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01379 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Chy12g01379 319 Gene3D Phosphorylase Kinase; domain 1 40 131 - -
Chy12g01379 319 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00712 Chy-Chr4:8666146 Chy12g01379 Chy-Chr12:17994198 8.14E-98 dispersed
Chy05g01408 Chy-Chr5:18086590 Chy12g01379 Chy-Chr12:17994198 6.50E-62 dispersed
Chy12g01379 Chy-Chr12:17994198 Chy09g00979 Chy-Chr9:12492862 1.11E-38 dispersed
Chy12g01379 Chy-Chr12:17994198 Chy05g01452 Chy-Chr5:18365650 1.11E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71643 PF00069 Pkinase 1.40E-65 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01379 K20604 - csv:101203133 580.867