Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy12g01395 | ATGGGGGATTCACCAAAAAGCCCAGAGAGCAGCGGCGGCGGGGGAGGGCGTTGTTCGTCGTCGTTAATGGAAAGCTTGTTGGGTCTTCTTCGGGTTCGGATCATTCGCGGCGTCAACCTCGCCGTTCGTGACGTCCGTAGCAGCGATCCTTATATTGTTGTTAAAATGTCTAAACAGAAATTAAAGACTCGTGTGATTAAGAAGGACATTAATCCAGAATGGAACGAAGACCTTACTCTATCGGTTACAGATCCCAACGCTTTAGTCAAGCTGACGGTGTACGACCACGACACATTTAGCATGGACGACAAGATGGGCGACGCAGAGTTTGAGATAGGGCCATACATCGAAGCATTGAAGATGGATCTATCAGGGTTACCGAGTGGAACGATAGTGACAAAAGTGCAACCAAGCAGGCAAAACTGCCTAGCGGAAGAGAGTGGGATTGTGTGGAACGAAGGAAAAGTTGTTCAAAACATTTGTCTACGATTGCGCAATGTCGAATGTGGAGAACTCGAAATCCAATTGCAATGGATTGATCTTCCTGGTTCTAAAGATAACATTGATCGATACACAAAGCGGGAAAGAGCAGCGGGAAACCTTGGGATGGGCGTAGCGTTTGGTATAGCATAA | 633 | 47.24 | MGDSPKSPESSGGGGGRCSSSLMESLLGLLRVRIIRGVNLAVRDVRSSDPYIVVKMSKQKLKTRVIKKDINPEWNEDLTLSVTDPNALVKLTVYDHDTFSMDDKMGDAEFEIGPYIEALKMDLSGLPSGTIVTKVQPSRQNCLAEESGIVWNEGKVVQNICLRLRNVECGELEIQLQWIDLPGSKDNIDRYTKRERAAGNLGMGVAFGIA* | 211 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 18082373 | 18085050 | - | Chy12G219950.1 | Chy12g01395 | 239176 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy12g01395 | 210 | CDD | C2_ArfGAP | 27 | 170 | - | - | |
| Chy12g01395 | 210 | SMART | C2_3c | 29 | 124 | IPR000008 | - | |
| Chy12g01395 | 210 | Gene3D | C2 domain | 24 | 200 | IPR035892 | - | |
| Chy12g01395 | 210 | Pfam | C2 domain | 28 | 114 | IPR000008 | - | |
| Chy12g01395 | 210 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE | 15 | 186 | - | - | |
| Chy12g01395 | 210 | ProSiteProfiles | C2 domain profile. | 1 | 128 | IPR000008 | - | |
| Chy12g01395 | 210 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 15 | 186 | IPR044562 | - | |
| Chy12g01395 | 210 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 28 | 165 | IPR035892 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy02g00470 | Chy-Chr2:2909290 | Chy12g01395 | Chy-Chr12:18082373 | 1.62E-43 | dispersed | |
| Chy10g00229 | Chy-Chr10:5776523 | Chy12g01395 | Chy-Chr12:18082373 | 7.35E-65 | dispersed | |
| Chy10g00230 | Chy-Chr10:5786478 | Chy12g01395 | Chy-Chr12:18082373 | 3.02E-45 | dispersed | |
| Chy10g01357 | Chy-Chr10:17812983 | Chy12g01395 | Chy-Chr12:18082373 | 2.87E-37 | dispersed | |
| Chy12g00386 | Chy-Chr12:4545430 | Chy12g01395 | Chy-Chr12:18082373 | 1.02E-36 | dispersed | |
| Chy12g00622 | Chy-Chr12:8941201 | Chy12g01395 | Chy-Chr12:18082373 | 7.98E-35 | dispersed | |
| Chy06g01325 | Chy-Chr6:12523606 | Chy12g01395 | Chy-Chr12:18082373 | 8.18E-69 | transposed | |
| Chy09g00845 | Chy-Chr9:11264366 | Chy12g01395 | Chy-Chr12:18082373 | 2.04E-72 | transposed | |
| Chy12g01395 | Chy-Chr12:18082373 | Chy02g02309 | Chy-Chr2:27116609 | 1.72E-76 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy12g01395 | - | - | csv:101220577 | 335.88 |