Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01399 ATGGCGACGTCGGTGGCTGATCAAAGTAAGAGAGAGTTGAACAATGTGCTTTCACCATCTTCTTCTCCGCCTGTGGTGGTGAGCTCGAGGTGGAATCCGACTCCCGAACAGTTGAGAGTTTTGGAGGAATTGTATCGGCGAGGGACTCGAACCCCGTCGGCTGATCAAATTCAACATATTACTTCCCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAACGTGTTCTATTGGTTTCAAAACCATAAAGCTAGAGAACGACAGAAACGTCGTCGACAAATGGAATCTTCAGCCATTACTACTGCCGACCACTCGACTCGTGACCTCGATGTCCTTGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCTGAG 426 48.12 MATSVADQSKRELNNVLSPSSSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITSQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESSAITTADHSTRDLDVLERKDSGSGRTVYEEQTKNWVPSTNCSTLPE 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18125161 18126116 + Chy12G219990.1 Chy12g01399 239180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01399 142 CDD homeodomain 30 90 IPR001356 GO:0003677
Chy12g01399 142 Gene3D - 26 89 - -
Chy12g01399 142 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 7 121 IPR044555 GO:0003700|GO:0099402
Chy12g01399 142 MobiDBLite consensus disorder prediction 86 128 - -
Chy12g01399 142 MobiDBLite consensus disorder prediction 1 30 - -
Chy12g01399 142 Pfam Homeodomain 29 88 IPR001356 GO:0003677
Chy12g01399 142 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 7 121 - -
Chy12g01399 142 MobiDBLite consensus disorder prediction 106 122 - -
Chy12g01399 142 SMART HOX_1 26 93 IPR001356 GO:0003677
Chy12g01399 142 ProSiteProfiles 'Homeobox' domain profile. 34 89 IPR001356 GO:0003677
Chy12g01399 142 SUPERFAMILY Homeodomain-like 28 94 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02313 Chy12g01399 CCT
Chy02g02313 Chy12g01399 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01558 Chy-Chr3:17744966 Chy12g01399 Chy-Chr12:18125161 3.09E-30 dispersed
Chy11g01253 Chy-Chr11:18672533 Chy12g01399 Chy-Chr12:18125161 3.26E-31 dispersed
Chy12g00182 Chy-Chr12:2192615 Chy12g01399 Chy-Chr12:18125161 2.09E-12 dispersed
Chy02g00262 Chy-Chr2:1697987 Chy12g01399 Chy-Chr12:18125161 1.45E-17 transposed
Chy03g00173 Chy-Chr3:1584609 Chy12g01399 Chy-Chr12:18125161 1.42E-29 transposed
Chy04g01735 Chy-Chr4:23725336 Chy12g01399 Chy-Chr12:18125161 2.99E-14 transposed
Chy07g00400 Chy-Chr7:3182409 Chy12g01399 Chy-Chr12:18125161 3.42E-15 transposed
Chy06g02276 Chy-Chr6:26696933 Chy12g01399 Chy-Chr12:18125161 8.18E-15 transposed
Chy12g01399 Chy-Chr12:18125161 Chy02g02313 Chy-Chr2:27156129 6.31E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18895 PF00046 Homeodomain 3.40E-20 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01399 - - csv:101209268 279.641