Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01399 ATGGCGACGTCGGTGGCTGATCAAAGTAAGAGAGAGTTGAACAATGTGCTTTCACCATCTTCTTCTCCGCCTGTGGTGGTGAGCTCGAGGTGGAATCCGACTCCCGAACAGTTGAGAGTTTTGGAGGAATTGTATCGGCGAGGGACTCGAACCCCGTCGGCTGATCAAATTCAACATATTACTTCCCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAACGTGTTCTATTGGTTTCAAAACCATAAAGCTAGAGAACGACAGAAACGTCGTCGACAAATGGAATCTTCAGCCATTACTACTGCCGACCACTCGACTCGTGACCTCGATGTCCTTGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCTGAG 426 48.12 MATSVADQSKRELNNVLSPSSSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITSQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESSAITTADHSTRDLDVLERKDSGSGRTVYEEQTKNWVPSTNCSTLPE 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18125161 18126116 + Chy12G219990.1 Chy12g01399 239180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01399 142 CDD homeodomain 30 90 IPR001356 GO:0003677
Chy12g01399 142 Gene3D - 26 89 - -
Chy12g01399 142 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 7 121 IPR044555 GO:0003700|GO:0099402
Chy12g01399 142 MobiDBLite consensus disorder prediction 86 128 - -
Chy12g01399 142 MobiDBLite consensus disorder prediction 1 30 - -
Chy12g01399 142 Pfam Homeodomain 29 88 IPR001356 GO:0003677
Chy12g01399 142 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 7 121 - -
Chy12g01399 142 MobiDBLite consensus disorder prediction 106 122 - -
Chy12g01399 142 SMART HOX_1 26 93 IPR001356 GO:0003677
Chy12g01399 142 ProSiteProfiles 'Homeobox' domain profile. 34 89 IPR001356 GO:0003677
Chy12g01399 142 SUPERFAMILY Homeodomain-like 28 94 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01399 - - - csv:101209268 279.641
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g02313 Chy12g01399 CCT
Chy02g02313 Chy12g01399 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01558 Chy-Chr3:17744966 Chy12g01399 Chy-Chr12:18125161 3.09E-30 dispersed
Chy11g01253 Chy-Chr11:18672533 Chy12g01399 Chy-Chr12:18125161 3.26E-31 dispersed
Chy12g00182 Chy-Chr12:2192615 Chy12g01399 Chy-Chr12:18125161 2.09E-12 dispersed
Chy02g00262 Chy-Chr2:1697987 Chy12g01399 Chy-Chr12:18125161 1.45E-17 transposed
Chy03g00173 Chy-Chr3:1584609 Chy12g01399 Chy-Chr12:18125161 1.42E-29 transposed
Chy04g01735 Chy-Chr4:23725336 Chy12g01399 Chy-Chr12:18125161 2.99E-14 transposed
Chy07g00400 Chy-Chr7:3182409 Chy12g01399 Chy-Chr12:18125161 3.42E-15 transposed
Chy06g02276 Chy-Chr6:26696933 Chy12g01399 Chy-Chr12:18125161 8.18E-15 transposed
Chy12g01399 Chy-Chr12:18125161 Chy02g02313 Chy-Chr2:27156129 6.31E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g212 . . . Bda15g00511 Bpe12g00698 . . . Cmo13g01029 Cmo18g00054 . Cma11g00311 . Car11g00287 Sed12g2115 Cpe20g00149 Cpe04g01371 Bhi02g00135 Tan09g1827 Cmetu02g0991 . Hepe09g0388 . . Cla06g01422 Cam06g1576 Cec06g1636 Cco06g1628 Clacu06g1538 Cmu06g1492 Cre06g2301 Cone2ag0760 . . . Lsi02g00230 Csa01g00712 Chy12g01399 Cme12g01833 Blo13g00175 . . . . . . Bma08g00054 Sed08g2754 . Cmo11g00316 Cma13g00993 Cma18g00071 Car13g00827 Car18g00062 Cpe09g01115 . Bhi08g01290 Tan05g2195 Cmetu12g1142 Lac10g0287 Hepe07g2356 . . Cla04g01050 Cam04g1093 Cec01g1608 Cco01g1654 Clacu04g1119 Cmu04g1103 Cre01g1402 Lsi06g01287 Csa01g00431 Chy02g02313 Cme02g01686
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy12g01399 CCT,ECH 1 142 Wox Gene Family AT3G18010 61.6 3.4e-41 166.0
Chy06g02276 . 1 278 Wox Gene Family AT4G35550 50.2 9.1e-71 263.8
Chy07g00400 . 1 219 Wox Gene Family AT4G35550 53.6 3.2e-60 228.8
Chy06g02276 . 36 175 Wox Gene Family AT1G20700 55.9 1.8e-39 159.5
Chy03g01558 . 5 160 Wox Gene Family AT1G46480 65.1 6.7e-52 200.7
Chy12g01399 CCT,ECH 1 142 Wox Gene Family AT3G18010 61.6 3.4e-41 166.0
Chy03g01558 . 5 160 Wox Gene Family AT1G46480 65.1 6.7e-52 200.7
Chy06g02276 . 1 278 Wox Gene Family AT4G35550 50.2 9.1e-71 263.8
Chy07g00400 . 1 219 Wox Gene Family AT4G35550 53.6 3.2e-60 228.8
Chy06g02276 . 36 175 Wox Gene Family AT1G20700 55.9 1.8e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004252 3 1 2 3 2 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18895 PF00046 Homeodomain 3.40E-20 CL0123 Chy TF