Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01400 TGTAACAACTCTGGTGGGAGCTTTAGCAGAAGAAAGACAAACTCTGTGGAACTCTCTTGAACAATATCGGTCATGATGAGAGTTTCTCTGAGATCTCTTGTAGCTCTCACGCTCTACACTCTCTTCACTTCCCACATTTCAGTTTTGGTCTCTGCCACTACTATAACATTCTACAACAAATGCTCTCATCCAGTTTGGCCTGGCATTCAGCCTAGCGCTGGTAAGCCCTTGTTGGCTCGTGGAGGCTTCAAGCTCCCACCCAACAAGGCTTACAATCTTCAACTTCCAGCCCTTTGGTCTGGTCGTTTTTGGGGTCGCCATGGCTGTGCTTTTGATGCATCTGGAAGAGGAAAGTGTGCTACAGGAGATTGTGGAGGTTCCCTCTTTTGCAATGGCATTGGAGGTACTCCACCAGCCACTCTTGCTGAGATAACACTTGGAAATGACCAAGATTTCTATGATGTGAGCCTTGTTGATGGCTACAATTTGGCTATTTCCATTACCCCATCTAAAGGCTCAGGGAAATGTAGTTATGCTGGCTGTGTGAGTGACCTTAACATGATGTGTCCTGTGGGCTTACAAGTTAGATCTCATGATAATAGAAAAGTTGTGGCTTGCAAAAGTGCTTGCTTTGCATTCAATTCTCCAAGGTATTGCTGCACTGGTAGATTTGGGAATCCACAATCTTGCAAGCCAACTGCTTATTCAAAGATCTTCAAGACTGCTTGTCCCAAGGCTTACTCTTATGCTTATGATGATCCCACTAGCATTGCAACTTGCACCGGTGGAAATTATTTGGTCACTTTTTGCCCTCATCACGGTTAGCAATTAAAAAAGGAAAAAGTTGTAGTCTCTAAAATATGATACTTTTGATAGGAGTTTGTTTATGGAGTCTGTAGTGGCTTTTACTAATGCACTTATATTGATGACATCTTTCCTTTTTCTCTCTTTTTCTTTATGATGGTAGAGAATTAATTGGTTTTTGGCTGTTGGGGGTTTTGTATTTAATTGGTGGTTGTGGTTATTGTAGCAATGGCTGAACTATAAGATAAATGATGTGTTTAAAAGAGATCTAAGAGGCTAATTAGCTTACCAAGGCTTGTAGTTTCTTGCCCGCACTGCTAATACGCAAATGACAGTAACATATGAGATGTGTTGTGGAGTCTGACTGGATTTCTGTTGTGTTCCTTTGGCCACTTGATAAGGTGAAAAGCGTTGCCAGCTGGGTTAGATATCCAATGGCTTCCCTTGTTTTCACACCGGGGGATGCTTAGCTATTAGGTCATGAATTTGTAATGTAATTTAACCAAAAGCCTACGTTCATCAATATGATATTACAAATCAACTCAAAATTG 1355 41.48 CNNSGGSFSRRKTNSVELS*TISVMMRVSLRSLVALTLYTLFTSHISVLVSATTITFYNKCSHPVWPGIQPSAGKPLLARGGFKLPPNKAYNLQLPALWSGRFWGRHGCAFDASGRGKCATGDCGGSLFCNGIGGTPPATLAEITLGNDQDFYDVSLVDGYNLAISITPSKGSGKCSYAGCVSDLNMMCPVGLQVRSHDNRKVVACKSACFAFNSPRYCCTGRFGNPQSCKPTAYSKIFKTACPKAYSYAYDDPTSIATCTGGNYLVTFCPHHG*QLKKEKVVVSKI*YF**EFVYGVCSGFY*CTYIDDIFPFSLFFFMMVEN*LVFGCWGFCI*LVVVVIVAMAEL*DK*CV*KRSKRLISLPRLVVSCPHC*YANDSNI*DVLWSLTGFLLCSFGHLIR*KALPAGLDIQWLPLFSHRGMLSY*VMNL*CNLTKSLRSSI*YYKSTQNX 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18141359 18142822 + Chy12G220000.1 Chy12g01400 239181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01400 435 Gene3D Thaumatin 52 270 IPR037176 -
Chy12g01400 435 SUPERFAMILY Osmotin, thaumatin-like protein 52 271 IPR037176 -
Chy12g01400 435 Pfam Thaumatin family 58 270 IPR001938 -
Chy12g01400 435 ProSitePatterns Thaumatin family signature. 114 129 IPR017949 -
Chy12g01400 435 PANTHER OS03G0233200 PROTEIN 32 272 IPR001938 -
Chy12g01400 435 SMART tha2 54 270 IPR001938 -
Chy12g01400 435 ProSiteProfiles Thaumatin family profile. 51 272 IPR001938 -
Chy12g01400 435 PANTHER THAUMATIN-LIKE PROTEIN 32 272 - -
Chy12g01400 435 PRINTS Pathogenesis-related protein signature 114 143 IPR001938 -
Chy12g01400 435 PRINTS Pathogenesis-related protein signature 53 65 IPR001938 -
Chy12g01400 435 PRINTS Pathogenesis-related protein signature 150 166 IPR001938 -
Chy12g01400 435 PRINTS Pathogenesis-related protein signature 260 269 IPR001938 -
Chy12g01400 435 PRINTS Pathogenesis-related protein signature 101 112 IPR001938 -
Chy12g01400 435 CDD TLP-PA 53 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01400 - - - csv:101219392 530.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01883 Chy-Chr1:24185335 Chy12g01400 Chy-Chr12:18141359 1.29E-90 dispersed
Chy04g01507 Chy-Chr4:21671028 Chy12g01400 Chy-Chr12:18141359 5.48E-69 dispersed
Chy04g01508 Chy-Chr4:21671133 Chy12g01400 Chy-Chr12:18141359 1.99E-69 dispersed
Chy12g00178 Chy-Chr12:2157764 Chy12g01400 Chy-Chr12:18141359 8.09E-60 dispersed
Chy12g01400 Chy-Chr12:18141359 Chy02g00565 Chy-Chr2:3402686 3.63E-86 dispersed
Chy12g01400 Chy-Chr12:18141359 Chy12g01401 Chy-Chr12:18141431 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g213 Blo04g00849 Blo16g00113 . . . Bpe13g00376 . . Cmo13g01030 Cmo18g00053 . . . . . Cpe20g00148 . . . . . . . . . . . . . . . . . . . Lsi02g00229 Csa01g00710 Chy12g01400 Cme12g01834 . . Bda11g01787 . . . Bma03g00919 . Sed08g1361 . . Cma13g00995 Cma18g00070 Car13g00828 Car18g00061 Cpe09g01116 . Bhi08g01289 Tan05g2196 Cmetu04g1577 Lac10g0286 Hepe07g2357 . . Cla04g01051 Cam04g1094 Cec01g1609 Cco01g1655 Clacu04g1120 Cmu04g1104 Cre01g1403 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001931 3 2 2 2 1 2 2 2 2 3 2 2 4 2 2 4 2 0 4 2 2 2 2 2 2 2 2 3 2 3 67