Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01405 ATGGATCGCCTCAATAAGGTTCTCGGTAGCTTCCTCCCCACCTTTCCTGCATCAACTGAGATTGATGGTGACAAGCAATCAGAATTTTTCACAGAGTATGGAGAAGCAAGCCGATACCAAATTCAAGAAGTTATTGGGAAAGGAAGCTACGGAATTGTTGGTTCTGCCATTGACACCCAGACCGGTGAAAGAGTTGCCATCAAGAAAATTAATGATGTGTTTGAGCATGTATCCGATGCCATACGGATCCTCAGAGAAATTAAGCTTCTTCGGATGCTTCATCATCCAAATATTGTAGAGATAAAGCATATTATGCTTCCTCCCTCACAACGAGAATTCAAAGATATATATCTTGTTTTTGAGTTAATGAAGTCTGATCTTCACCATGTAATTAAGACAAATAATGATCTTTCTCCTCGGCAGCATAAATTTTTTCTGTACCAGCTTCTTAGTGGCCTAAAATATATTCATACTGCAAATGTACTTCATCGAGATTTGAAGCCAAAAAACATACTTGCTAATGCGGACTGCAGACTCAAGATATGTGATTTTGGACTTGCTCGTGTATCTTTTAGCGATGCACCATCTACTATTTTCTGGACAGATTATGTTGCAACTCGATGGTATCGTGCTCCTGAACTCTGTGGATCATTTTTCTCGAGATATACCCCTGCTATAGATATATGGAGTATCGGATGCATATTTGCAGAAATGCTGACAGGGAAACCTTTGTTTCCTGGAAAAAATGTGGTTCACCAATTAGATCTAATCACCGATCTGTTTGGCTCTCCTGAACCCGAGGCCATTGCAAAGATTCGTAATGAGAAGGCGAGAAGGTATCTCGGAAACATGCGTAAAAAACAACCAGTTCCATTCTCACGAAAGTTTCCTAATGTTGACCCAATGGCACTTTGTTTACTAGAACGTCTCCTAGCATTTGATCCCAAATGTCGTCTAACAGCTGCAGAGGCCCTTGCTGATCCTTACTTCAACGGCATGGGGAAACCAGAACTTGAACCTTCTATTCAACCAATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGGAAGTTATCAAAAGATGATGTTAGAGAGTTGATTTATGCAGAGATTTTAGAGTATCATCCCCAGATGCTTCAGGGTTGTCTACGTGGTGGAGACCATCCAACTACCTTTATGTATCCAAGTGGGGTTGATCGATTTAAGCTTCAGTTTGCACATCTGGAAGAGCACCACGGTAAAGGTGAAAGAAGAAGTCCACTTCAAAGGCAGAACATTTCTTTACCTCGGGAGCGGGTTAGTCCTACCGAGCAGAACAACACTGAGAATAACATTGATTCCGAAAGAGGGAAAGATAAGAGTGCTCATCTCTTGAAAAGTGCAAGTATCAGTGCTTCGAGATGTGTTGGGGTAATACCAAAGGAGAAATATGAGGTGGAAGAAACTGAAGTGAAAAATGAAGCAGTGGATGGCTTGTCTCAAAAGATTGCAGTCCTTCAAACTTAA 1503 40.98 MDRLNKVLGSFLPTFPASTEIDGDKQSEFFTEYGEASRYQIQEVIGKGSYGIVGSAIDTQTGERVAIKKINDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSQREFKDIYLVFELMKSDLHHVIKTNNDLSPRQHKFFLYQLLSGLKYIHTANVLHRDLKPKNILANADCRLKICDFGLARVSFSDAPSTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLITDLFGSPEPEAIAKIRNEKARRYLGNMRKKQPVPFSRKFPNVDPMALCLLERLLAFDPKCRLTAAEALADPYFNGMGKPELEPSIQPISKLEFEFERRKLSKDDVRELIYAEILEYHPQMLQGCLRGGDHPTTFMYPSGVDRFKLQFAHLEEHHGKGERRSPLQRQNISLPRERVSPTEQNNTENNIDSERGKDKSAHLLKSASISASRCVGVIPKEKYEVEETEVKNEAVDGLSQKIAVLQT* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18170850 18174169 + Chy12G220050.1 Chy12g01405 239186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01405 500 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 18 460 - -
Chy12g01405 500 ProSiteProfiles Protein kinase domain profile. 39 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01405 500 SMART serkin_6 39 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01405 500 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Chy12g01405 500 CDD STKc_TDY_MAPK 38 375 - -
Chy12g01405 500 MobiDBLite consensus disorder prediction 409 452 - -
Chy12g01405 500 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 18 460 - -
Chy12g01405 500 Gene3D Phosphorylase Kinase; domain 1 55 376 - -
Chy12g01405 500 Gene3D Transferase(Phosphotransferase) domain 1 125 353 - -
Chy12g01405 500 Pfam Protein kinase domain 39 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01405 500 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
Chy12g01405 500 MobiDBLite consensus disorder prediction 419 442 - -
Chy12g01405 500 SUPERFAMILY Protein kinase-like (PK-like) 35 336 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02318 Chy12g01405 CCT
Chy02g02318 Chy12g01405 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01438 Chy-Chr11:21183907 Chy12g01405 Chy-Chr12:18170850 0 dispersed
Chy12g01405 Chy-Chr12:18170850 Chy03g00689 Chy-Chr3:9434641 3.28E-111 dispersed
Chy02g00223 Chy-Chr2:1488638 Chy12g01405 Chy-Chr12:18170850 8.37E-55 transposed
Chy02g01168 Chy-Chr2:8375612 Chy12g01405 Chy-Chr12:18170850 2.41E-09 transposed
Chy04g01186 Chy-Chr4:18212636 Chy12g01405 Chy-Chr12:18170850 8.83E-55 transposed
Chy08g00650 Chy-Chr8:14387205 Chy12g01405 Chy-Chr12:18170850 7.39E-54 transposed
Chy08g01104 Chy-Chr8:18190298 Chy12g01405 Chy-Chr12:18170850 9.53E-53 transposed
Chy11g00938 Chy-Chr11:13002112 Chy12g01405 Chy-Chr12:18170850 1.03E-51 transposed
Chy12g01405 Chy-Chr12:18170850 Chy02g02318 Chy-Chr2:27194904 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71647 PF00069 Pkinase 1.00E-67 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01405 - - bhj:120082540 939.102