Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01412 ATGGCGTATATCGAGGAGGAAATTCGTGCATTAGAACTTGATCCACCAGATGTTAATGGGGTTTCTAATCAAGATGCAAAGATGGAGGATGTTGTGGAATCCAAAAGTCTGGAAGAAGATGTGCAGACAGAAGAAACTGTGAAGCCCAACGAGATGGAAGAAGTGAAGGAGAACACATCTGCTAAGGAGAAGGAAGTTTCGTTGGCTGATGAAAATGAAGTTGAAGAGGATTTGGAATTGGATCGCAAAAGACATTTGAATGTTGTGTTCATTGGTCATGTTGATGCTGGAAAGTCTACAATTGGAGGCCAGATACTTTTCCTCAGCAATCAGGTTGATGAGCGTACAATCCAAAAGTATGAAAAAGAAGCAAAAGATAAAAGCAGAGAAAGCTGGTACATGGCGTATATCATGGACACAAATGAAGAGGAGAGAGTTAAGGGAAAAACTGTCGAAGTGGGTAGAGCGCATTTTGAAACTGAGACCACAAGGTTTACAATTTTGGATGCTCCGGGTCACAAAAGTTATGTTCCAAATATGATCAGTGGGGCATCTCAAGCTGATATAGGGGTTCTGGTAATTTCTGCCAGGAAAGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAGCATGTTTTGCTGGCCAAAACTTTGGGTGTTGCCAAGCTTCTTGTTGTAGTGAATAAGATGGATGAACCCACTGTAAAATGGTCAAAAGAAAGGTATGATGAGATAGAGTCCAAGATGGCACCCTTCTTGAAGTCTTCTGGTTACAATGTAAAGAAAGATGTCCAATTTTTACCTATATCCGGTCTTCATGGTGTTAATATGAAAACAAGAGTGGATAAGAAAGTATGCCCATGGTGGGATGGTCCGTGCTTCTTTGAAATCCTTGATACGATTGAAGGTCCACCAAGAAATCCAAAAGATCCATTTAGGATGCCAATCATTGACAAGTTCAAGGACATGGGAACAACTATTATGGGTAAAGTGGAATCTGGTACTGTTCGTGAGGGAGATTCCTTATTGTTAATGCCAAATAAGATTCAGGTGAAAGTTACTGCTGTGATGTGTGATGAGAATAAAGTTCGGAGTGCTGGACCTGGGGAAAATCTTCGTGTTAGAATATCTGGAGTTGAAGAAGAAGATATAATGTCTGGGTTTGTACTATCAAGCATTGCGAAGGCAATTCCCTCTGTTTCTGAGTTTATTGCACAGTTGCAGATTCTTGAGCTTCTGGATAATGCAATATTTACAGCTGGATATAAGGCCGTACTTCACATTCATGCTGTTGTTGAAGAATGTGAGATCATAGAGCTGCTACAGCAGATTGATCCGAAGACTAGGAAACCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCAGTTATTTTGTGCCGCGTCCAGGTCAATAACTTGATCTGCATCGAGAAGTTTTCTGATTTTCCTCAGCTTGGAAGATTTACTCTTCGTACTGAAGGGAAAACAGTTGCCGTAGGAAAAGTCACCGATATTTCTTCTGCTAGCAATTAA 1545 40.71 MAYIEEEIRALELDPPDVNGVSNQDAKMEDVVESKSLEEDVQTEETVKPNEMEEVKENTSAKEKEVSLADENEVEEDLELDRKRHLNVVFIGHVDAGKSTIGGQILFLSNQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVAKLLVVVNKMDEPTVKWSKERYDEIESKMAPFLKSSGYNVKKDVQFLPISGLHGVNMKTRVDKKVCPWWDGPCFFEILDTIEGPPRNPKDPFRMPIIDKFKDMGTTIMGKVESGTVREGDSLLLMPNKIQVKVTAVMCDENKVRSAGPGENLRVRISGVEEEDIMSGFVLSSIAKAIPSVSEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIIELLQQIDPKTRKPMKKKVLFVKNGAVILCRVQVNNLICIEKFSDFPQLGRFTLRTEGKTVAVGKVTDISSASN* 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18213333 18222814 + Chy12G220120.1 Chy12g01412 239193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01412 514 PANTHER TRANSLATION FACTOR 40 505 - -
Chy12g01412 514 CDD EF1_alpha 87 308 - -
Chy12g01412 514 CDD eRF3_II 314 395 - -
Chy12g01412 514 PANTHER BNAA06G12300D PROTEIN 40 505 - -
Chy12g01412 514 Coils Coil 110 130 - -
Chy12g01412 514 MobiDBLite consensus disorder prediction 15 72 - -
Chy12g01412 514 PRINTS GTP-binding elongation factor signature 87 100 IPR000795 GO:0003924|GO:0005525
Chy12g01412 514 PRINTS GTP-binding elongation factor signature 166 176 IPR000795 GO:0003924|GO:0005525
Chy12g01412 514 PRINTS GTP-binding elongation factor signature 182 193 IPR000795 GO:0003924|GO:0005525
Chy12g01412 514 PRINTS GTP-binding elongation factor signature 226 235 IPR000795 GO:0003924|GO:0005525
Chy12g01412 514 Gene3D Translation factors 402 510 - -
Chy12g01412 514 CDD eRF3_C_III 401 509 - -
Chy12g01412 514 Pfam Elongation factor Tu C-terminal domain 402 509 IPR004160 -
Chy12g01412 514 Gene3D Translation factors 312 397 - -
Chy12g01412 514 SUPERFAMILY Translation proteins 307 396 IPR009000 -
Chy12g01412 514 MobiDBLite consensus disorder prediction 28 69 - -
Chy12g01412 514 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 139 154 IPR031157 -
Chy12g01412 514 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 404 509 IPR009001 -
Chy12g01412 514 Pfam Elongation factor Tu domain 2 327 393 IPR004161 GO:0005525
Chy12g01412 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 318 IPR027417 -
Chy12g01412 514 Pfam Elongation factor Tu GTP binding domain 83 290 IPR000795 GO:0003924|GO:0005525
Chy12g01412 514 Gene3D - 61 306 IPR027417 -
Chy12g01412 514 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 83 312 IPR000795 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01412 K03267 ERF3, GSPT; peptide chain release factor subunit 3 - csv:101217809 984.171
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01323 Chy-Chr11:19446294 Chy12g01412 Chy-Chr12:18213333 7.22E-73 dispersed
Chy11g01324 Chy-Chr11:19447386 Chy12g01412 Chy-Chr12:18213333 2.41E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44