Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01422 ATGAAATCCTCCGTCCTTCTCTTCTTTTTGACGTTTCTTTTCTTTCATCTTCATCTCTGTTTTGCCGATGATGCCCTCGATGAATTCAAAGCTTGCGGTGTGAATTACAACTGCGGTCAATTGGTTAACATCTCCTATCCATTTTGGGGAAATGAGCGCCAATCCTTTTGCGGTCGTCGACAATTCGGCCTCACTTGCAAAGATAATGAAACCACTACGATTCAAATCCATTCTCGGCAATATATTGTTGTGAACATCAGCCAATCGGATCATAGAATGACGATCGCAAGGTCAGAGCTGTTTGATGATTACTGCCCTAACAATGAAATTGAAGCGGCGACGTTGGATTTTAGTTTGTTCAAGTATTCTTCGAACGATCTGAATCTGTCCGTGTGGTACGATTGTCCGGTGCTGCCGGGAACCCAGAATTTCACATTTGAGTGTGGATCGGAAGGGGAAAAACGTGGGAGAGCGAATTATGCTTTGGAGAAGAATGAAGCGATGAGTTTGAGTCCATTTAACGTAGATTGTAGGATTAAAATTGAAGTGACAATTACGTCGAAGGTATTGAGGGAAGGGAAACCGAACAGAACGATGGTGGTGGAAAGGGGAATGAAAGAAGGGTTTGAAGTTGAATATGGGGATTTTTACACCGTAGCTTGTGAGGGATGTAAGGAATACGGCGGCGGCGTGTGTGGTCGAAACGAGACGGAAGAATTTCTGTGCCAATGTGAAAATGGAGAATTATATCCTTTTGTTTGCATACCTTCTCCTCCGGGAAAAAAAAGAATAAGGGTAAAGACCTTCATAGGTGCATTTTCGGGAATTAGCAGTCTGATAATCTTTATAATCGTCTTCGTCATCTACTACTACATGAGAAAAAACAAATCAAACAATGACAAAATTGAGGAGAGTATAAGAAGATATTCCGCACTAATGCCCAAGCGATATAGTTACTCAAAGTTGAAGAAAATCACTGACTCCTTCAAGAACGAACTTGGCCAAGGAGGATTTAGCATTGTCTACCGAGGAAAGCTACCCGATGGACGTGACGTGGCTGTGAAACTTTTGAATGAGTCCAAAGAAAATGTCCAAGGTTTCATCAACGAAGTTGTTAGCATCACCAGAACTTCGCATGTGAATATAGCCTCACTCTTAGGTTTTTGCTATGAAAGGAAGAAAAGAGCTTTGATTTATGACTATATGCCTAGAGGGTCATTAGACCAATATATATCCCACAAAGGGCCACACAGAAACAACACTGAGTTGGATTGGAACACACTTTATAGCATTGTTATCGGTGTGGCACGGGGATTAGAATACTTGCACCGCGGTTGCATAACAAGGATTTTACATTTTGACATTAAACCACACAACATACTTTTGGATAGTGATTTTTGTCCCAAGATATCAGACTTTGGGCTTGCCAAGCAATGTAGGGCTAGCGAAAGTCGTGTAACGATGACGGGCGTGAAAGGGACGGTAGGATTTATTGCACCTGAAGTAATATTCAGAAACTTTGGCAAGGTATCTCACAAGTCTGATGTATATAGCTATGGAATGTTGGTTCTTGAAATGGTGGGAGCAAGAAAGAATCCCAATGAAGGAGCGGAGCAAAAGAGTGAAGAGTATTTTCCAGATTGGATATATAAGGATCTTACACAAAGTGAAATAGATGGAGGGTGTTTGTGGGGAAACGCAGAAGCAGAAAAAGAGATGGCAAGAAAAATGATAATCGTGGGACTACATTGCATTCAGACATTGCCCGACAACAGGCCGTCGATGACCGATGTTGTTGTAATGTTGGAAGGCAGTGTTGATGGCTTACAGATTCCACCAAAACCCAACTTGTTTGGACCTCCAACCTTTGAGCATCCCCAACCTTCTTCCTCTTCATCAAATGGAATTCCTAATGATAGTTTGATAGCAGAGAAGCATCACAGCAACAACCATTATTTACCCTCTTGA 1968 41.87 MKSSVLLFFLTFLFFHLHLCFADDALDEFKACGVNYNCGQLVNISYPFWGNERQSFCGRRQFGLTCKDNETTTIQIHSRQYIVVNISQSDHRMTIARSELFDDYCPNNEIEAATLDFSLFKYSSNDLNLSVWYDCPVLPGTQNFTFECGSEGEKRGRANYALEKNEAMSLSPFNVDCRIKIEVTITSKVLREGKPNRTMVVERGMKEGFEVEYGDFYTVACEGCKEYGGGVCGRNETEEFLCQCENGELYPFVCIPSPPGKKRIRVKTFIGAFSGISSLIIFIIVFVIYYYMRKNKSNNDKIEESIRRYSALMPKRYSYSKLKKITDSFKNELGQGGFSIVYRGKLPDGRDVAVKLLNESKENVQGFINEVVSITRTSHVNIASLLGFCYERKKRALIYDYMPRGSLDQYISHKGPHRNNTELDWNTLYSIVIGVARGLEYLHRGCITRILHFDIKPHNILLDSDFCPKISDFGLAKQCRASESRVTMTGVKGTVGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEMVGARKNPNEGAEQKSEEYFPDWIYKDLTQSEIDGGCLWGNAEAEKEMARKMIIVGLHCIQTLPDNRPSMTDVVVMLEGSVDGLQIPPKPNLFGPPTFEHPQPSSSSSNGIPNDSLIAEKHHSNNHYLPS* 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18279054 18281811 + Chy12G220220.1 Chy12g01422 239203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01422 655 Gene3D Transferase(Phosphotransferase) domain 1 402 610 - -
Chy12g01422 655 SUPERFAMILY Protein kinase-like (PK-like) 303 602 IPR011009 -
Chy12g01422 655 SMART serkin_6 327 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01422 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Chy12g01422 655 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Chy12g01422 655 Gene3D Phosphorylase Kinase; domain 1 299 401 - -
Chy12g01422 655 Pfam Wall-associated receptor kinase galacturonan-binding 37 97 IPR025287 GO:0030247
Chy12g01422 655 PANTHER RUST RESISTANCE KINASE LR10-RELATED 13 633 IPR045874 GO:0004672
Chy12g01422 655 MobiDBLite consensus disorder prediction 611 655 - -
Chy12g01422 655 ProSiteProfiles Protein kinase domain profile. 327 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01422 655 Pfam Protein tyrosine and serine/threonine kinase 329 601 IPR001245 GO:0004672|GO:0006468
Chy12g01422 655 MobiDBLite consensus disorder prediction 623 639 - -
Chy12g01422 655 Pfam Wall-associated receptor kinase C-terminal 148 246 IPR032872 -
Chy12g01422 655 PANTHER - 13 633 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00808 Chy-Chr9:10788988 Chy12g01422 Chy-Chr12:18279054 5.95E-72 dispersed
Chy12g01422 Chy-Chr12:18279054 Chy12g01425 Chy-Chr12:18286926 0 dispersed
Chy12g01422 Chy-Chr12:18279054 Chy12g01424 Chy-Chr12:18283251 0 proximal
Chy12g01422 Chy-Chr12:18279054 Chy02g02350 Chy-Chr2:27390919 3.61E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71648 PF07714 PK_Tyr_Ser-Thr 1.10E-44 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01422 - - csv:105434801 1049.27