Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01424 ATGAAAATTTCCCTCCCTCTCTTACTCTTCTTCATAATCCTTTTGTTTCATCTTCATCTCTGTTTCGCCGATGCTGCACACGATGAATTCAAAGCTTGCGGTGTGAATTACAACTGCGGTCAATTGGTTAACATCTCGTATCCATTTTGGGGGAATGATCGCCAATCTTTTTGCGGTCGCCGTGAATTCGGCCTCAGTTGCAAAGACAACGAAACCACTACCATGCATATCAATTCTTGGCAATATATTGTTGTGAACATCAGTCAATTGGATCATAGAATGACGATCGCAAGGTCAGAGCTGTTCGATGATTACTGCCCTGACAAAGAAATTGAAGCGGGGACTTTGGATTTTAGTCCGTTCAAGTATTCTCCGAACGATCTGAATCTGTCCGTGTGGTACGATTGTCCGATACTGCTGGAAGTCCCGAAGATTTTCATATTTGAGGGTGGATCGAAAGGGGAAAGAAGTGGGAGAACGAATTATGCTTTGGAGGAGTTTGAACCGACGAAATGGAGTCCATATAACAGAGAATGTGGAATTAAAATCGATGTGACGATTACGTTGGAGATATTTCGGGAAGGGAAAACGAACAGAACGGTGATGATGGAAAGGGGAATGAAAGAAGGGTTTGAAGTTGAATATGAGGACATTTACAACACAGCTTGCGAGGCATGTAAGGAATACGGCGGGGCGTGTGGGCGAAACGCAACAAAAGAATTTCTATGCATTTGTAACAATGGAGAAGTACATTCTTATGTTTGCACACCTCCGGGAAGAAGAAGAATATTGGCAAATGCCTTCATAGGTGCATTTTCGGGAACTGGCGGTTTGATAATCTTTATAATCATCATCGCCATCTATTACATGAGGAAAAACAAATCAAACAAAGACAAAATTGAAGAGAGTATAAGAAGATATTCCAGATTAATGCCCAAGCGATATAGTTACTCAAAGTTGAAGAAAATTACAGACTCCTTCAAGAACAAACTTGGCCAAGGAGGATTTAGCACTGTCTACCGAGGAAAGCTACCCGATGGACGTGATGTGGCTGTAAAACTTTTCAATGAGTCGAGAGAAAATGGCCAAGATTTCATCAATGAAGTTGTTAGCATCACCGGAACTTCGCATGTAAATATAGCCTCACTGTTAGGTTTCTGCTACGAGAGGAAGACGAGAGCTCTGATGTATGAATATATGCCTAGAGGGTCATTAGACCAATATATATCCCACAAAGGGCCACACAGAAACAACATTGAGCTGGATTGGAACACACTTTATAGCATCGTTATCGGTGTGGCACGAGGATTAGAATACTTGCACCGTGGTTGCATAACAAGGATTTTACATTTTGACATTAAACCACACAACATACTTTTGGATAGTGATTTTTGTCCCAAGATATCAGACTTTGGGCTTGCCAAGCAATGTAGGGCTAGAGAAAGTCATGTAACGATGACAGGCGTGAAAGGGACGGTAGGATTTATTGCACCTGAAGTAATATTTAGGAACTTTGGTAAGGTATCTCACAAGTCTGATGTATATAGCTATGGAATGTTAGTTCTTGAAATGGTGGGAGCAAGAAAGAATCCAAATGATGGAGTGGGGCAAAGCAGTGGAGAGTACTTTCCTGATTGGATATACAATAATCTTACACAAAGTGAAATAGATGAAGGTTATTGTTTGCGGGGAAGCACAGAAGAAGAAAAAGAGATGACAAGAAAAATGATAATCGTGGGACTACATTGTATTCAAACATTGCCCGACAACAGGCCGTCAATGACCGACGTTATTGCAATGTTGGAAGGCAGTGGCGATGGCTTACAAATTCCACCGAAACCCAACTTGTTTGGACCTCCAACCTTTGAGCATCCCCAACCTTCTTCCTCTTCATCTAACTAA 1902 41.54 MKISLPLLLFFIILLFHLHLCFADAAHDEFKACGVNYNCGQLVNISYPFWGNDRQSFCGRREFGLSCKDNETTTMHINSWQYIVVNISQLDHRMTIARSELFDDYCPDKEIEAGTLDFSPFKYSPNDLNLSVWYDCPILLEVPKIFIFEGGSKGERSGRTNYALEEFEPTKWSPYNRECGIKIDVTITLEIFREGKTNRTVMMERGMKEGFEVEYEDIYNTACEACKEYGGACGRNATKEFLCICNNGEVHSYVCTPPGRRRILANAFIGAFSGTGGLIIFIIIIAIYYMRKNKSNKDKIEESIRRYSRLMPKRYSYSKLKKITDSFKNKLGQGGFSTVYRGKLPDGRDVAVKLFNESRENGQDFINEVVSITGTSHVNIASLLGFCYERKTRALMYEYMPRGSLDQYISHKGPHRNNIELDWNTLYSIVIGVARGLEYLHRGCITRILHFDIKPHNILLDSDFCPKISDFGLAKQCRARESHVTMTGVKGTVGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEMVGARKNPNDGVGQSSGEYFPDWIYNNLTQSEIDEGYCLRGSTEEEKEMTRKMIIVGLHCIQTLPDNRPSMTDVIAMLEGSGDGLQIPPKPNLFGPPTFEHPQPSSSSSN* 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18283251 18285375 + Chy12G220240.1 Chy12g01424 239205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01424 633 SMART serkin_6 325 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01424 633 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Chy12g01424 633 MobiDBLite consensus disorder prediction 608 633 - -
Chy12g01424 633 Pfam Wall-associated receptor kinase C-terminal 170 247 IPR032872 -
Chy12g01424 633 SUPERFAMILY Protein kinase-like (PK-like) 302 602 IPR011009 -
Chy12g01424 633 Gene3D Transferase(Phosphotransferase) domain 1 400 607 - -
Chy12g01424 633 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 626 IPR045874 GO:0004672
Chy12g01424 633 Gene3D Phosphorylase Kinase; domain 1 296 399 - -
Chy12g01424 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Chy12g01424 633 Pfam Wall-associated receptor kinase galacturonan-binding 38 97 IPR025287 GO:0030247
Chy12g01424 633 ProSiteProfiles Protein kinase domain profile. 325 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01424 633 Pfam Protein tyrosine and serine/threonine kinase 327 600 IPR001245 GO:0004672|GO:0006468
Chy12g01424 633 PANTHER - 15 626 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01424 Chy-Chr12:18283251 Chy12g01426 Chy-Chr12:18292493 0 dispersed
Chy12g01422 Chy-Chr12:18279054 Chy12g01424 Chy-Chr12:18283251 0 proximal
Chy12g01424 Chy-Chr12:18283251 Chy12g01425 Chy-Chr12:18286926 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71649 PF07714 PK_Tyr_Ser-Thr 9.40E-46 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01424 - - csv:101207814 1192.95