Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01425 ATGACGATGCCAGATCAAACCTTTTCGACGATTACTGCCCAGAAAATCAAATCCAAACGGCGAGGTTGGATAAAAGTTTGGTGTTTCTTCTTCACACTGGTTTGGTTTGATGTTCAGCTCTGTTTGGGCGATAAAAACAACGAACTATTTGAAGCTTGCCGTGTGAACTACAACTGTGGAGATTTGGTAGACATAAAGTATCCGTTTTGGGGGAATGAGCGGCCAGAATTTTGCGGCCGGCGAGAATTTGGACTCAATTGCACAGACAACAAAACCATGATTCGAATCAAGAATCACCAATATATGGTTGTGGACATCAGTCAATCGGATAATATAATGACGATAGCAAGATCAGAGCTGTTCGATGATCACTGCCCTAACAGTCAAATAAAAAACGCAACGTTGAATTTTAATCTGTTAAGTTATACTTCGAATGATCAGAATCTATCTTTGTGGTACAATTGTCCGCCGCTAGTGAAAGTTCCGTCGAATTTCACATTTGAGTGCGGAGGGGAAGGGGAAGAAACTCGTGGGAGAGTGAATTACGCTTTGGACAAGAATGAGGCGAAGAATTGGAGTTCATATATGGGAGATTGTAGTATGTACATGGAAGTGACAATTACGGGTAATGTATTGAGCGGAGGAGTAAAGAACAGAACGAGGGTGGTGGAAAGGGGATTGAAAGAAGGATTTGAAGTTGAATATGTGGATGTTTACAACATAGCTTGCGATGGATGTATCGAATCCGGTGGCGAGTGTGGTGGTTCAGTCCATCGTGAACAGTTTGAATGCTATTGTGGAGAAGATATATATCCATACGTTTGCCAACCTCCTCCTTCTGGAAAACGTATATTGACAAGGCCCGACGTCATAGGAGTTTCAGTATCCATCATGCAGATAATCTCTATAATTTCTATAATCATCATCTGCATCTACTGCACGATGAAAAGCATATCAAACAAAGATAAAATAATTGAGGAAAGTATAAGGAGATATTCTACACAAACTCCCAAGCGATATAGTTACTCAAAGCTGAAGAAAATCACGAACTCCTTCAAGAACAAACTTGGTCAAGGAGGATTTAGCACTGTCTACAAAGGAAAGCTATCTAACGGACGTGATGTGGCTGTGAAACTTTTGAACAAGTCCAGTGAAAATGGACAAGATTTTATCAATGAAGTGGTTAACATCACAAGAACTTCTCATGTAAATATAGCCTCAATCTTAGGTTTCTGCTACGAGAGGAAGAAAAGAGCTTTAATTTATGAATATATGTCTAGAGGGTCATTAGACAAATATATATCTCACAAAGGGCCGCAGGGAAGCAATGATAAGTTGGATTGGAACACATTATATAGGATTGTTATTGGTGTGGCTCGAGGCTTAGAGTACTTGCATCGTGGTTGTAACACAAGGATTTTGCATTTTGACATTAAACCACATAACATACTTTTGGATAGTGATTTTTGTCCCAAGATCTCGGACTTTGGGCTTGCCAAGCAATGGAAGATTGGAGAAAGTCATGTAACGATGACAGGCGTGAAAGGGACGGTAGGATTTATTGCACCTGAAGTAATATTCAGAAACATTGGTAATGTATCTCACAAGTCTGATGTATATAGCTATGGAATGTTAGCTCTTGAAATGGTGGGAGCAAGAAAGAATCCAAATGATGGAGTGGGGCAAAACAGTGAAGAGTTCTTTCCTGATTGGATATATAAAACTCTTACACAAAGTGGAATAGATGATGGCTGTTTGTGGGGAAACGCAGAAGAAGAAAAAGAGATGACAAGAAAAATGATAATCGTGGGACTACATTGTATTCAAACATTGCCCAACGACAGGCCGTCGATGACCGATGTTATTGCAATGTTGGAAGGTAGTGTTGATGGCTTACAAATTCCACCAAAACCCAACTTGTTTGGACCTCCAACCTTTGAGCATCCCCAACCTTCTTCCTCTTCATATTCTAGCAGAGAAGCATCACAACAACAATCATATTTACCCTCTTGA 2013 40.09 MTMPDQTFSTITAQKIKSKRRGWIKVWCFFFTLVWFDVQLCLGDKNNELFEACRVNYNCGDLVDIKYPFWGNERPEFCGRREFGLNCTDNKTMIRIKNHQYMVVDISQSDNIMTIARSELFDDHCPNSQIKNATLNFNLLSYTSNDQNLSLWYNCPPLVKVPSNFTFECGGEGEETRGRVNYALDKNEAKNWSSYMGDCSMYMEVTITGNVLSGGVKNRTRVVERGLKEGFEVEYVDVYNIACDGCIESGGECGGSVHREQFECYCGEDIYPYVCQPPPSGKRILTRPDVIGVSVSIMQIISIISIIIICIYCTMKSISNKDKIIEESIRRYSTQTPKRYSYSKLKKITNSFKNKLGQGGFSTVYKGKLSNGRDVAVKLLNKSSENGQDFINEVVNITRTSHVNIASILGFCYERKKRALIYEYMSRGSLDKYISHKGPQGSNDKLDWNTLYRIVIGVARGLEYLHRGCNTRILHFDIKPHNILLDSDFCPKISDFGLAKQWKIGESHVTMTGVKGTVGFIAPEVIFRNIGNVSHKSDVYSYGMLALEMVGARKNPNDGVGQNSEEFFPDWIYKTLTQSGIDDGCLWGNAEEEKEMTRKMIIVGLHCIQTLPNDRPSMTDVIAMLEGSVDGLQIPPKPNLFGPPTFEHPQPSSSSYSSREASQQQSYLPS* 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18286926 18290574 + Chy12G220250.1 Chy12g01425 239206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01425 670 Pfam Protein tyrosine and serine/threonine kinase 352 624 IPR001245 GO:0004672|GO:0006468
Chy12g01425 670 ProSiteProfiles Protein kinase domain profile. 350 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01425 670 PANTHER RUST RESISTANCE KINASE LR10-RELATED 44 662 IPR045874 GO:0004672
Chy12g01425 670 Gene3D Transferase(Phosphotransferase) domain 1 425 633 - -
Chy12g01425 670 Gene3D Phosphorylase Kinase; domain 1 322 424 - -
Chy12g01425 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Chy12g01425 670 MobiDBLite consensus disorder prediction 634 670 - -
Chy12g01425 670 SUPERFAMILY Protein kinase-like (PK-like) 328 626 IPR011009 -
Chy12g01425 670 MobiDBLite consensus disorder prediction 646 670 - -
Chy12g01425 670 PANTHER - 44 662 - -
Chy12g01425 670 Pfam Wall-associated receptor kinase galacturonan-binding 53 116 IPR025287 GO:0030247
Chy12g01425 670 SMART serkin_6 350 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01425 670 Pfam Wall-associated receptor kinase C-terminal 182 268 IPR032872 -
Chy12g01425 670 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00724 Chy-Chr7:7329464 Chy12g01425 Chy-Chr12:18286926 7.97E-15 dispersed
Chy12g01422 Chy-Chr12:18279054 Chy12g01425 Chy-Chr12:18286926 0 dispersed
Chy12g01425 Chy-Chr12:18286926 Chy12g01427 Chy-Chr12:18297252 6.61E-61 dispersed
Chy12g01424 Chy-Chr12:18283251 Chy12g01425 Chy-Chr12:18286926 0 tandem
Chy12g01425 Chy-Chr12:18286926 Chy12g01426 Chy-Chr12:18292493 3.57E-177 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71650 PF07714 PK_Tyr_Ser-Thr 5.40E-46 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01425 - - cmo:103498644 1139.41