Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01426 ATGAGAACCCATCTCAAATTGACTTTCTTTCAAACCTCCACCATCAACAAAATCATCTTCATCGCCTTCATCTTGTTTCATTTTCCTCCATGTTGCCATGATGCCCTCTATGAATTTAAAGCTCGTGGTGTGAATTACTACAATAATCCAGAGATATGCAGGAGGCTGAAATTGGATTATACGATTGGAAGGAACTCATTGGAGGAATATTATTATAACTTTATGAAGATCGACCAGTGGGAACATCGTCATCAAGTGACGATCATGAAAGAAGACCACTTTGATAACTTTAACGCACTAAAGAAAATGGAAACAACAACTCTGGATCACCATGAGTCTATGTATTGTTCAAATGACAGATCAAACATGTGTGTCTGGTACGATTGTTCAAATAGGGAGCATTACGGATTTGGTTGGGGCATAAAACGGGTGTGGTGGAGTTACGTTTCTGAAACGAGTGGACAAACTGGAGTGCCGAAAATGAAGATTATGACAAACGGGTCAGAAGGTGAGATAGAGAAAGTGATGACAGTATCGAGGGCTGCGGAATTTGGGAAAGGATGGTTGAGCTTCAGAGACATGAATCATAATCGATCTATAGACTACACACAGCCTATGATGGAGTCTTGTTTTTCAAGATGTAGGGTCAACCTCAGATTCGAGAGACCAGAAAAAATGGAAGGATTTCAAGGTCGAAAGGACAAACTGGGCCTGTTGGATATAGCTGTAGGGTCTAATGATTCAAACACGAGGTTGGGACATTATATTACGTATGAAGAAATAGAGAGCTTAAAATTCAAATGTAAAACGAATAGAATTAATCTGTTGGAGAAGCCAGCAAGTAGGACGAAAGAAGAGTTGGATGTTGAATATAAGGATCTGTATACGATGGTATGTGAGACATGTAGAGAAACTCGTGGAAAGTGTGGAAAAAATGCAACGCACCTATTTTACTGCATTTGTGAAACCCAAGATCAGCGTTGTCTTCACGGCTACGTAGTTGCTCCTCGACATGGAAAGTCCAATTTACTCCAGAAAATATTTATCATAGTTGCAATTGCTTCAGGAAGCATCATTTTAACAATCTCCATAATCATCTTCATATACTTCAAAAGGAAACAGTTCTTGGAGGACAAGAAAATTGAGGAAATGATAAGGAGTTATTCCACGCACACACCAAAGCAGTATAGTTACTCGCAGTTAAAGAAAATCACAAATTCCTTCATGGACAAGCTTGGCCAAGGAGGATTTAGCACTGTCTACAAAGGAAAACTACACGATGGTCAGGACGTGGCAGTGAAACTCTTGAATGAATCAAGAGAAAACGGCCAAGATTTTATGAATGAAGTTGTTAGCGTCACCAAAACATCACATGTAAACATAGCCACTCTCTTGGGATTCTGCTATGAGCAAAGTAAAAGGGCTTTAGTTTATAAATATATGTCCAATGGGTCATTGGACAAGTATATATTTCAAAGAGGGCTACAGGTAAAAAATGGTGTGGAGTTGAGTTTGAGCACACTCTATAACATCGTTATTGGTGTGGGTCGAGGCTTAAAGTATTTGCATTGCCACTGCAACACAAGGATCTTGCATTTTGACATCAAACCAGACAACATTCTTTTGGACAATAATTTCTGCCCCAAGATCTCAGACTTTGGGCTTGCTAAGCAATGCATGGCGAAAGAGAATCATGTGTCAATGACAGGTATGAAAGGAACAGTAGGATTCATGGCGCCTGAAGTAATATTTAGACATCTTGGCAAAGTTTCCCACAAATCTGATGTTTATAGTTATGGAATGTTGGTTCTTGAGATGTTGGGTGAAAAAAAGTGTCCCAATGAAGAAATGGGGCAGAGCAGTGAAGAGTATTTTCCTGATTGGATATATAATAAGCTTACACAACATGAAATTGATGGAGGTTCTTATTCCTGGGGAAATACAAACGAGGAAGAAGAAATGGCAAGAAAAATGATAATTGTGGGGCTGCACTGTATTCAGACATTACCCGACAACAGGCCATCAATGACCAATGTGGTTGCGATGTTGGAAGGCAGTGTTGATGTCTTACAGATTCCACCAAAGCCCTACTTGTTTGGACCTCCTGCGACTGATCTACTCCAAGGTGTTGCTGCTTCTTCTTCATCCAACTCGTACTAA 2160 39.86 MRTHLKLTFFQTSTINKIIFIAFILFHFPPCCHDALYEFKARGVNYYNNPEICRRLKLDYTIGRNSLEEYYYNFMKIDQWEHRHQVTIMKEDHFDNFNALKKMETTTLDHHESMYCSNDRSNMCVWYDCSNREHYGFGWGIKRVWWSYVSETSGQTGVPKMKIMTNGSEGEIEKVMTVSRAAEFGKGWLSFRDMNHNRSIDYTQPMMESCFSRCRVNLRFERPEKMEGFQGRKDKLGLLDIAVGSNDSNTRLGHYITYEEIESLKFKCKTNRINLLEKPASRTKEELDVEYKDLYTMVCETCRETRGKCGKNATHLFYCICETQDQRCLHGYVVAPRHGKSNLLQKIFIIVAIASGSIILTISIIIFIYFKRKQFLEDKKIEEMIRSYSTHTPKQYSYSQLKKITNSFMDKLGQGGFSTVYKGKLHDGQDVAVKLLNESRENGQDFMNEVVSVTKTSHVNIATLLGFCYEQSKRALVYKYMSNGSLDKYIFQRGLQVKNGVELSLSTLYNIVIGVGRGLKYLHCHCNTRILHFDIKPDNILLDNNFCPKISDFGLAKQCMAKENHVSMTGMKGTVGFMAPEVIFRHLGKVSHKSDVYSYGMLVLEMLGEKKCPNEEMGQSSEEYFPDWIYNKLTQHEIDGGSYSWGNTNEEEEMARKMIIVGLHCIQTLPDNRPSMTNVVAMLEGSVDVLQIPPKPYLFGPPATDLLQGVAASSSSNSY* 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18292493 18296492 + Chy12G220260.1 Chy12g01426 239207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01426 719 Pfam Protein tyrosine and serine/threonine kinase 408 683 IPR001245 GO:0004672|GO:0006468
Chy12g01426 719 PANTHER RUST RESISTANCE KINASE LR10-RELATED 284 696 IPR045874 GO:0004672
Chy12g01426 719 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 2.4 284 696 - -
Chy12g01426 719 SUPERFAMILY Protein kinase-like (PK-like) 383 684 IPR011009 -
Chy12g01426 719 SMART serkin_6 406 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01426 719 Gene3D Phosphorylase Kinase; domain 1 378 480 - -
Chy12g01426 719 Gene3D Transferase(Phosphotransferase) domain 1 481 691 - -
Chy12g01426 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Chy12g01426 719 ProSiteProfiles Protein kinase domain profile. 406 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01426 719 ProSitePatterns Protein kinases ATP-binding region signature. 412 434 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01424 Chy-Chr12:18283251 Chy12g01426 Chy-Chr12:18292493 0 dispersed
Chy12g01426 Chy-Chr12:18292493 Chy09g00808 Chy-Chr9:10788988 1.49E-69 dispersed
Chy12g01425 Chy-Chr12:18286926 Chy12g01426 Chy-Chr12:18292493 3.57E-177 tandem
Chy12g01426 Chy-Chr12:18292493 Chy12g01427 Chy-Chr12:18297252 4.73E-08 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71651 PF00069 Pkinase 3.60E-47 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01426 - - csv:105434800 729.169