Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01427 ATGAAAATCTACCTAAAACCCAGAAATAGTACCTTACTCTTCTTCTTCTGCATCGCGTTTCACCTTTCCCCGTGTTTCAGCGAAGATTGCAGTGAGAGTTACAATTGCGGCGAATTAGTAAACATCAGCTATCCCTTTTGGGGGAATAAGGAGAGAGTATGCGGGCAGCAAGAATTCAAACTGAACTGCAAGAACAACCAAACCACCACAATTTACATAAACTCTTTCGAATACAACGTTCTGAGAATCGACCAATGGAATAGTAGAATGAGGATAGCAAGATCAGATTTGTTCGAGAATTACTGCCCAGAAAAGGAAATCCAAGTGGCGACTATGAATGGGCATCGGTTCGTGTATTCTTCCAACAATCAGAATATTTCGGTATGGTACAATTGCTCGACGGATAACGAAATTCAAATTCCAGATACTTACAAATTTCGGTGCGGTGGGAAATGGGAAAAGCTTCGGAGACCGAATTATGCATTCGAGCCGTCGGCGAAGAGTTGGAGTCTAGAAAGGGGGGAATGCGGAATGAACATAGAGGTGATGGTCACGAGAGAGGGGTTGAAAGAAGGTATAAAAGAGAGGAAAAGTTTTGTGGAGAAGGCTGTGAAATGGGGTTTCGATGTGGAATATGAGAATTGGTATAAGGATGCTTGTAATGAATGCAATGAAAATGGAGGCAAATGTGGAGGGAACAACACGCATCCATACTACTGCATTTGTACCAATGGAATTGCTAGTTCCTACGACTGTGTTGGCTCTGGTTTAGGAGGCATAGTGATTATGAGTCTAATCTTCTTAATTAGGAATCGTTTGAACAAAAATAAGCATCCCCATGCTTCTTCCTCCATTCTCCTTCCAAATAATTCTCGTGATCGTCTAATGAAGGCACTTGATCAGCATGGAGAAAATTCCGTGGCTGTTCCTCTCTTCTCTTATCAAGAACTTGTACGAGCTACAGACAAATTTAACACCACCAACGAACTTGGAGATGGTGGCTTTGGCACCGTCTACTATGGCAAACTCCGAGATGGACGTGAGGTTGCAGTTAAACGATTATCCTTTCCATCTCTTCTTTCACAACTTTCTTTGGCTCTTATACTCCTTCTTCTGCTCTTTTCTGCTCCTGCTAATTCCTCTGTTTATGATGAATGGTTCTTCAACTGCAATTACTTCAAATGCGACCCCTTTGTTACCAAGGAATTTCCTTTCTGGAGATATAACGGAACAGAAACTTGTTATCGTGTTGGTTACTCCGAGTCAATGAAGCTTACATGTGATGGAGGCCGTGAAACCATAGAAATTGAGGGAGCAGAGTACCAACTCCTGGGTCATAGTAAATTTGATCGAACTTTTATAGTTGCGGAAAATGATAAAAATATTTCGTCGAGTTCCATGTATTTGACAATTTCTTTATATTCTGACTGCTGGTCTACCGAACCTGTACCAATATACACCCCTACTTGTTCTGAAGCTGCATATAGCTACATCCCAGAAGAAAGTAACGTACTTCTGCCTAATATGTGTTGGATAAGTGTAGTAGCGCCAATTCCACAATGGTTGCTAAAACAAGTTGGTGATGATTTTCAAAAGGTAGCGCAATATATCACCGCTCAGTTTAAGTCAGGGCGGAAGGTAAATGTTCAAGTATGTAACAATTGCAAAGATTCTGGTGGTGGTGGTGTTTATGTTTATGACTTGGAATTGAATCAATCAAGATGCTGCTGTCAATCTTCCTTTGATAGGATTGAATTCTGTTCTACCTCACTACTTGCAGCAACACCACGACCTTCTCCATCCAGATCGGGAATGTCAAATACGTCAACAGAAGCACCTTCTCCAGGCAAGGATGAAAATATCGCACCGTATGCAAATATCAAAAAGTCGAAGAAGCCATCGAAAAAGACACTCACTATAGCTTTAAGTGTCACCGGAAGCATCATTTTGATCTTCGTTATCATCATCCTTTTCATCTACTACACAAGAAAAATGAGACTTACCAACTCAAACAAACAAGACCTTATCGAAGAAACCATCAAAAGATATTCCACGCGAATACCAAAGCGATATACTTACTCAACTCTGAAGAAAATCACTGATTCTTTCAAGAACAAGCTTGGCCAAGGAGGGTTCGGCACAGTCTACAAAGGAAGATTACCCGACGGACGCGACGTGGCCGTAAAACTTCTGAATGAATCCGAAGAAAATTGTCAAGATTTTATCAATGAAGTCATAAGCATGACAACAACTTCCCATGTAAACATAGTCACTTTCTTGGGGTTCTGCTACGAGCTGAACAAAAGAGCTTTGATTTATGAGTACATGCCTAAAGGGTCATTAGACAAATACATATGTCACAAAGGGCAACAAAAAAATAAAATTGAATTGAGTTGGATGACTCTATATAACATCATTGTGGGCGTGGCTCGAGGATTAGAATACTTGCACCGCGGCTGCAATACAAGGATTCTACATTTTGATATCAAGCCACACAACATTCTTTTGGACGATGAGTTTTGCCCCAAGATCTCCGACTTTGGGCTTTCAAAGCAGTGGAAGGCAAAAGAGAGTCATGTGTCGATGTCAGGTGCAAAGGGGACAATAGGATTCATGGCTCCGGAAGTAGTACAAAGAAGGTATGGCAAAGTTTCACACAAGTCTGATGTTTATAGCTATGGAATGTTGATTCTTGAGATGGTTGGTGAAAGGCAATGCCCTAATAAAGGAGTGGGAGACAATAGTGAAGAGTATTTTCCTGATTGGATATACAAGAACTTTGCAGAATATGAAATGAGTAGAAATTGTAAGCAGTGGGGAGAAACAGAGGAAGAAGAAGAAATAGCTAGAAAAATGGTGGTTGTGGGTTTGAATTGCATTCAGACATTGCCAGACGATCGACCGTCCATGACTGAGGTAGTCGCTATGATGGAAGGGAATGTTGATGGATTACCGATTCCCCCGAAACAGACCCTCTTCTTACATCCTGCAACTGTTTCTTCTTCTACCTCAATTTTAGAACACTAG 3027 41.1 MKIYLKPRNSTLLFFFCIAFHLSPCFSEDCSESYNCGELVNISYPFWGNKERVCGQQEFKLNCKNNQTTTIYINSFEYNVLRIDQWNSRMRIARSDLFENYCPEKEIQVATMNGHRFVYSSNNQNISVWYNCSTDNEIQIPDTYKFRCGGKWEKLRRPNYAFEPSAKSWSLERGECGMNIEVMVTREGLKEGIKERKSFVEKAVKWGFDVEYENWYKDACNECNENGGKCGGNNTHPYYCICTNGIASSYDCVGSGLGGIVIMSLIFLIRNRLNKNKHPHASSSILLPNNSRDRLMKALDQHGENSVAVPLFSYQELVRATDKFNTTNELGDGGFGTVYYGKLRDGREVAVKRLSFPSLLSQLSLALILLLLLFSAPANSSVYDEWFFNCNYFKCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGGRETIEIEGAEYQLLGHSKFDRTFIVAENDKNISSSSMYLTISLYSDCWSTEPVPIYTPTCSEAAYSYIPEESNVLLPNMCWISVVAPIPQWLLKQVGDDFQKVAQYITAQFKSGRKVNVQVCNNCKDSGGGGVYVYDLELNQSRCCCQSSFDRIEFCSTSLLAATPRPSPSRSGMSNTSTEAPSPGKDENIAPYANIKKSKKPSKKTLTIALSVTGSIILIFVIIILFIYYTRKMRLTNSNKQDLIEETIKRYSTRIPKRYTYSTLKKITDSFKNKLGQGGFGTVYKGRLPDGRDVAVKLLNESEENCQDFINEVISMTTTSHVNIVTFLGFCYELNKRALIYEYMPKGSLDKYICHKGQQKNKIELSWMTLYNIIVGVARGLEYLHRGCNTRILHFDIKPHNILLDDEFCPKISDFGLSKQWKAKESHVSMSGAKGTIGFMAPEVVQRRYGKVSHKSDVYSYGMLILEMVGERQCPNKGVGDNSEEYFPDWIYKNFAEYEMSRNCKQWGETEEEEEIARKMVVVGLNCIQTLPDDRPSMTEVVAMMEGNVDGLPIPPKQTLFLHPATVSSSTSILEH* 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18297252 18303144 + Chy12G220270.1 Chy12g01427 239208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01427 1008 MobiDBLite consensus disorder prediction 595 615 - -
Chy12g01427 1008 ProSiteProfiles Protein kinase domain profile. 701 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01427 1008 PANTHER RUST RESISTANCE KINASE LR10-RELATED 372 1000 IPR045874 GO:0004672
Chy12g01427 1008 Pfam Wall-associated receptor kinase C-terminal 160 244 IPR032872 -
Chy12g01427 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Chy12g01427 1008 Pfam Protein tyrosine and serine/threonine kinase 703 975 IPR001245 GO:0004672|GO:0006468
Chy12g01427 1008 PANTHER RUST RESISTANCE KINASE LR10-RELATED 27 354 IPR045874 GO:0004672
Chy12g01427 1008 Gene3D Transferase(Phosphotransferase) domain 1 776 983 - -
Chy12g01427 1008 Pfam Wall-associated receptor kinase galacturonan-binding 30 94 IPR025287 GO:0030247
Chy12g01427 1008 ProSitePatterns Protein kinases ATP-binding region signature. 707 729 IPR017441 GO:0005524
Chy12g01427 1008 Gene3D Phosphorylase Kinase; domain 1 296 364 - -
Chy12g01427 1008 Gene3D Phosphorylase Kinase; domain 1 674 775 - -
Chy12g01427 1008 MobiDBLite consensus disorder prediction 595 626 - -
Chy12g01427 1008 PANTHER - 27 354 - -
Chy12g01427 1008 PANTHER - 372 1000 - -
Chy12g01427 1008 SUPERFAMILY Protein kinase-like (PK-like) 681 977 IPR011009 -
Chy12g01427 1008 SUPERFAMILY Protein kinase-like (PK-like) 306 359 IPR011009 -
Chy12g01427 1008 SMART serkin_6 701 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00719 Chy-Chr7:7245761 Chy12g01427 Chy-Chr12:18297252 5.55E-28 dispersed
Chy12g01425 Chy-Chr12:18286926 Chy12g01427 Chy-Chr12:18297252 6.61E-61 dispersed
Chy12g01427 Chy-Chr12:18297252 Chy04g00305 Chy-Chr4:2727337 1.60E-71 dispersed
Chy12g01426 Chy-Chr12:18292493 Chy12g01427 Chy-Chr12:18297252 4.73E-08 tandem
Chy03g00077 Chy-Chr3:784652 Chy12g01427 Chy-Chr12:18297252 2.30E-10 transposed
Chy10g00957 Chy-Chr10:15119553 Chy12g01427 Chy-Chr12:18297252 2.32E-08 transposed
Chy10g01168 Chy-Chr10:16528969 Chy12g01427 Chy-Chr12:18297252 3.42E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71652 PF07714 PK_Tyr_Ser-Thr 6.10E-51 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01427 - - csv:105436377 673.7