Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01428 ATGTCATCAAAAAGACCCTTCACCGAAACTGATCCATGTACCGATCAGCAGATTCAGACAAAACGACCACGCCAGTCGTTTGCCTCGATCATTGGGGAAGTTGTAATGGTGAATTCCTTAAGACATTTATCAAAAGCACTGGAACCATTACTCAGACGTGTGGTGAATGAAGAAGTCGACCGATGTTTGATTCGTTATTCAAGATCATTAACCAGAGCATCTTCTTTAAAGATACAAGCCTTAGAACCATCTAGTTTTCAGTTATATTTTGTGAATAATCTTCCCTCTACTATTTTTACCGGAAGTAAGATTACCGACGTTGAGAGTCGGCCCCTCAGAATCGCTGTCGAAGTAGGTGGTGAAGATCCGTCGTTGCTGCCTATTTCAGCGTTGTTGAAAATTGAAATCGTTGTTTTGGACGGGGAATTTGCGTCGGGAGATCGGGAGGATTGGACGGCTGAGGAATTTAATGCTAGCATTGTTAAGGAAAGATCGGGAAAGAGGCCACTGCTTCACGGCGAAATGAATGTAGTTCTTAGGCACTGTGCTGCGACGATTGGGGATCTTGAATTCACCGATAACTCAAGTTGGATAAGGAGCAGAAAGTTTCGGTTGGGAGCCCGAATTGTTTCCGGTTCGGAGCGAGATAGATTTCCCCGCATTAGGGAAGCCATAACCGAACCTTTCGTGGTTAAAGATCATCGCGGTGAATGTAAGCATTTGCATTCTTCTTCCACAATACTTCAAATATTTTGTTTCCTAATACTTCAAAGTCCAAACATTAAAATATTTTCGTGTTTGATGGTTGAAGTGTACAAGAAACATTACCCTCCAATGTTGAATGATGAAGTATGGCGACTGGAAAAGATTGGGAAAGAAGGAGTGTTTCACAAAAGATTAAGCAATTACAATATCAAAACAGTTCAAGAATTTTTACAGCTTTACACTATTGATCCACAAAAACTAAGAACGATTTTAGGGGTAGCAATGTCTGAAAAGATGTGGGAGGCAACAGTAAAACATGCAAAAACTTGTGAATCAGGAAGCAAGCTCTACATGTTCCGTGGACCCAATTTCTTGCTGTTTTTGAACCCAATTTGTGAAGTAGTTAGAGCCATGATTGGAGAACAAATATATTCGTCTCGAGACCTCCACAATATCCCCCAGGATTACTTGAAGAATTTGAGGAGACAAGCATTTGATAACTGGGCTTCCCTACAAGACTTTGAAGGGAACTTAAGAGAATCATTGTCACTAACACAAGGCAATGAAGGAAGTGAGTTTTTAGTTGGGAAATCTTTGCTTCAAAGTAGCTATGAGTTTCTAAGTGGGCAACTCGAATGCCAAGGTTGGGATTCCAATTCCGATAATCAGTTTAATATCTCTGCAAGATTCGAAGGGAATTTTCACTGTAATTTTGGATAG 1425 40.63 MSSKRPFTETDPCTDQQIQTKRPRQSFASIIGEVVMVNSLRHLSKALEPLLRRVVNEEVDRCLIRYSRSLTRASSLKIQALEPSSFQLYFVNNLPSTIFTGSKITDVESRPLRIAVEVGGEDPSLLPISALLKIEIVVLDGEFASGDREDWTAEEFNASIVKERSGKRPLLHGEMNVVLRHCAATIGDLEFTDNSSWIRSRKFRLGARIVSGSERDRFPRIREAITEPFVVKDHRGECKHLHSSSTILQIFCFLILQSPNIKIFSCLMVEVYKKHYPPMLNDEVWRLEKIGKEGVFHKRLSNYNIKTVQEFLQLYTIDPQKLRTILGVAMSEKMWEATVKHAKTCESGSKLYMFRGPNFLLFLNPICEVVRAMIGEQIYSSRDLHNIPQDYLKNLRRQAFDNWASLQDFEGNLRESLSLTQGNEGSEFLVGKSLLQSSYEFLSGQLECQGWDSNSDNQFNISARFEGNFHCNFG* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18307264 18309095 - Chy12G220280.1 Chy12g01428 239209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01428 474 PANTHER PROTEIN SAR DEFICIENT 1 2 242 - -
Chy12g01428 474 Pfam Calmodulin binding protein central domain 279 345 IPR046830 -
Chy12g01428 474 Pfam Calmodulin binding protein-like N-terminal domain 86 234 IPR046831 -
Chy12g01428 474 Pfam Calmodulin binding protein C-terminal domain 350 408 IPR046829 -
Chy12g01428 474 PANTHER OS02G0177800 PROTEIN 2 242 IPR012416 GO:0005516
Chy12g01428 474 PANTHER OS02G0177800 PROTEIN 270 432 IPR012416 GO:0005516
Chy12g01428 474 PANTHER PROTEIN SAR DEFICIENT 1 270 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01428 - - - csv:101215184 847.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02555 Chy-Chr2:28801909 Chy12g01428 Chy-Chr12:18307264 6.04E-73 dispersed
Chy08g01067 Chy-Chr8:17797042 Chy12g01428 Chy-Chr12:18307264 3.72E-40 dispersed
Chy08g01068 Chy-Chr8:17831406 Chy12g01428 Chy-Chr12:18307264 1.04E-46 dispersed
Chy12g01428 Chy-Chr12:18307264 Chy08g01054 Chy-Chr8:17659825 8.36E-46 dispersed
Chy12g01428 Chy-Chr12:18307264 Chy05g01056 Chy-Chr5:15108059 5.61E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g294 . . . . . . . . . . . . . . . Cpe20g00130 . . . . . . . . . . . . . . . Cone2ag0623 . . . Lsi02g00191 . Chy12g01428 Cme12g01866 . . . . . Bpe15g00529 . . . . . . . Car13g00849 . . Cpe18g00828 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002933 1 1 1 1 1 2 2 2 2 1 1 2 2 1 1 2 2 2 1 2 1 1 1 1 1 1 1 3 6 3 49