Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01429 ATGGCGGAGCCGACGGCAAAGGTTCTTCAGGGCGTTCAGTTTCATCAACTCAGTAGCCTTATATCTCACTTTCTTGTGTTCGGGTTAGGATTGGTTATTGGGATTACTTTTAATTTCTCGATTAGGGGTCGTTTAGTTTCTTCCAGTAATTTTGAGCTGATACAGTGGCCGGTTACTCCGCCGCAACCGCCACCGGTGGTGGTGGGGATGAGAGATTTTAGGAGCTCAAAGAGTGTGGGGAAAGAGATGAGTAGTAGTAGTAGTGAGGGGGATGAGTTGGTTTACAGGATGAGAGGGTTACCGGCGGTGAAGGGAAGTAGGGGGAAGGTGGCATTCATGTTTTTAACGAGAAGGGATTTGCCGTTGAGGCCATTTTGGGAAAGGTTTTTCAATGGAAGTGAAGGATTATACTCAATTTATGTGCATTCTCGTCCTTCTTTCAATGCAACTTTCCCATTAAATTCTGTGTTTTATGGACGTAACATTCCTAGCAAGGTAGTAGTTGAATGGGGGCAGCCAAGCATGATTGAAGCGGAGCGACGGCTGTTAGCCAACGCTCTTCTCGACATCTCCAACCAACGATTCCTCCTTCTTTCCGAGTCTTGCATTCCCGTCTTCAATTTCACCACCGTCTACACTTATCTAATGGGGTCAGCTCATATCTTCGTCGACTCCTATGACTTACCAGGCCGTTTGGGCAGAAACCGGTACAGGTCCGAAATGCAGCCCACAATCCTTGAGACCCAATGGAGGAAAGGGTCCCAGTGGTTCGAAATGGACCGACGGACGGCGACGGAGGTGGTGGAGGACCGGAAGTACTTCCCAGTGTTCCAAAAGTACTGCCACCCGGGTTGCATTTCGGATGAGCATTATTTGGCGACGATGGTGAGTATAGAGTTTGGGGAAAGGAATTCGAACCGGACGCTGACTTGGACGGATTGGTCGAAGCATGGGCCTCACCCGACCGGGTTCGAGAGCGTGAATGTGACGGTTGGGCTTTTGGAAAGGATACGGGACGGCAGCACGTGCGAATATAATGGAGAAAAAAGTAGAATTTGTTATTTGTTTGCGAGAAAGTTCATGGGAAGTGCTTTGAATGGGCTGATGGAAATTGCTTCTCAAGTTATGTTCATCCATTGA 1140 48.33 MAEPTAKVLQGVQFHQLSSLISHFLVFGLGLVIGITFNFSIRGRLVSSSNFELIQWPVTPPQPPPVVVGMRDFRSSKSVGKEMSSSSSEGDELVYRMRGLPAVKGSRGKVAFMFLTRRDLPLRPFWERFFNGSEGLYSIYVHSRPSFNATFPLNSVFYGRNIPSKVVVEWGQPSMIEAERRLLANALLDISNQRFLLLSESCIPVFNFTTVYTYLMGSAHIFVDSYDLPGRLGRNRYRSEMQPTILETQWRKGSQWFEMDRRTATEVVEDRKYFPVFQKYCHPGCISDEHYLATMVSIEFGERNSNRTLTWTDWSKHGPHPTGFESVNVTVGLLERIRDGSTCEYNGEKSRICYLFARKFMGSALNGLMEIASQVMFIH* 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18333955 18336396 - Chy12G220290.1 Chy12g01429 239210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01429 379 PANTHER CORE-2/I-BRANCHING ENZYME 13 376 - -
Chy12g01429 379 Pfam Core-2/I-Branching enzyme 110 337 IPR003406 GO:0016020|GO:0016757
Chy12g01429 379 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 13 376 IPR044174 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01429 - - - csv:101207320 717.998
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00644 Chy-Chr11:7699667 Chy12g01429 Chy-Chr12:18333955 2.20E-47 dispersed
Chy12g01429 Chy-Chr12:18333955 Chy05g00878 Chy-Chr5:12953583 9.72E-64 dispersed
Chy12g01429 Chy-Chr12:18333955 Chy12g01430 Chy-Chr12:18338285 1.44E-112 tandem
Chy02g01600 Chy-Chr2:14744661 Chy12g01429 Chy-Chr12:18333955 2.30E-41 transposed
Chy12g01429 Chy-Chr12:18333955 Chy02g02352 Chy-Chr2:27393509 9.64E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g296 . . . . . . . . . . Cma10g00306 . Car10g00291 . . Cpe20g00129 . . . . . . . . . . . . . . . . . Cone13ag0308 . Lsi02g00190 Csa01g00672 Chy12g01429 Cme12g01867 . . . . . . . . Sed08g2189 Cmo10g00327 . . . Car13g00850 . . . Bhi08g01242 Tan05g2258 Cmetu12g1703 Lac10g0246 Hepe07g2381 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014703 0 1 0 0 0 1 0 1 1 1 0 1 0 1 1 0 1 0 0 1 1 1 1 2 1 0 1 0 1 0 18