Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01430 ATGGCTAATGATCAGCTGAAGCATTCTCCATCTCAGTTTTCCCAAATCTTCCATGTGTTCTTCTTACTTGTTGGCTTCTCCATTGGAATGGCTGTTAGTTTGAACGTCAAGAGCTTCTCATCATTCAACATCCAGCTCCCCAACTTTTCCTTTCCATCTTCACCATCAACAACACTAGTGTTTATCAGACAACAACAACCACCTCCGGCCTCATCATCACCACCACCACTTCAACGGCCGTCTCCTTCAGTTGACTCCTCCGAAATGAATAATTTTTTTGAGGTGAACGTAGAGCCGCCTCTAATGCATAGAATGAGTGATGACGAGGTGTTTTGGAGAGCATCCATGGTTCCAATGATCAAAGAATTTCCATACGAACGTGTGCCAAAAATTGCTTTCATGTTCCTGATAAAAGGGTCATTGCCTTTAGCTCCTTTGTGGGAAATGTTCTTCAAAGGACACGAACACCTGTTCTCAATTTATGTGCATACTCATCCATTGTATAATGTTTCTTCTTCTCTGCCTCTAAACTCTGTCTTCTATGGAAGAAGAATCCCAAGCCAGGCAGTGCAATGGGGGAGACCTTCCATGATCGACGCGGAGCGTCGCCTTCTAGCGAACGCTCTTCTCGACTTCTCTAATGAAAGATTCATCCTCCTCTCGGAAACTTGCATTCCTCTCTACAACTTCACCACCATCTATAACTACCTCATTAACTCCCAATACGCCTTCGTTTCTTCCTATGACGATCCCCGAAAAATAGGTCGTGGTCGATACAACCCCCGGATGTTTCCAGTCATATCGATCGCTGATTGGCGAAAAGGATCGCAGTGGATTGAAGTTGATCGAAGGGTGGCCATCGAGATAATCTCCGACTCAACATATTACCCTATTTTCAGGGAGCACTGCGGGCCGCCATGTTACATGGACGAGCATTACATTCCTACGTTGGTTAATATTGTTTTGCCGGACCGGAATTCCAACCGAACCGTTACTTGGGTTGATTGGTCCAAAAACGGTCCGCACCCGGGCAGATTTGGGCGGCGGGAGATCTCGGTCGAGCTTTTGAACCGGGTTCGGTTTGGTTTTAATTGTAGTTATAATGATGGAAACGAAAAAGTTTCATTATGCTTCTTGTTTGCTCGGAAATTCATGCCCGATTCTTTACAACCTCTGCTCAAGATTTGGCCGTCGCTATTGCAAGGTTTGATTTAA 1215 45.19 MANDQLKHSPSQFSQIFHVFFLLVGFSIGMAVSLNVKSFSSFNIQLPNFSFPSSPSTTLVFIRQQQPPPASSSPPPLQRPSPSVDSSEMNNFFEVNVEPPLMHRMSDDEVFWRASMVPMIKEFPYERVPKIAFMFLIKGSLPLAPLWEMFFKGHEHLFSIYVHTHPLYNVSSSLPLNSVFYGRRIPSQAVQWGRPSMIDAERRLLANALLDFSNERFILLSETCIPLYNFTTIYNYLINSQYAFVSSYDDPRKIGRGRYNPRMFPVISIADWRKGSQWIEVDRRVAIEIISDSTYYPIFREHCGPPCYMDEHYIPTLVNIVLPDRNSNRTVTWVDWSKNGPHPGRFGRREISVELLNRVRFGFNCSYNDGNEKVSLCFLFARKFMPDSLQPLLKIWPSLLQGLI* 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18338285 18339708 - Chy12G220300.1 Chy12g01430 239211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01430 404 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 8 401 - -
Chy12g01430 404 Coils Coil 400 404 - -
Chy12g01430 404 MobiDBLite consensus disorder prediction 63 88 - -
Chy12g01430 404 Pfam Core-2/I-Branching enzyme 131 359 IPR003406 GO:0016020|GO:0016757
Chy12g01430 404 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 8 401 IPR044174 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01430 - - - csv:101207079 778.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02352 Chy-Chr2:27393509 Chy12g01430 Chy-Chr12:18338285 3.64E-123 dispersed
Chy06g01425 Chy-Chr6:15027428 Chy12g01430 Chy-Chr12:18338285 1.71E-140 dispersed
Chy06g01642 Chy-Chr6:19060036 Chy12g01430 Chy-Chr12:18338285 8.36E-123 dispersed
Chy07g00226 Chy-Chr7:1852901 Chy12g01430 Chy-Chr12:18338285 2.76E-127 dispersed
Chy09g00894 Chy-Chr9:11710560 Chy12g01430 Chy-Chr12:18338285 1.37E-128 dispersed
Chy12g01429 Chy-Chr12:18333955 Chy12g01430 Chy-Chr12:18338285 1.44E-112 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g297 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy12g01430 Cme12g01868 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00397 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002679 1 2 1 1 1 2 2 2 2 2 1 2 0 2 2 2 2 6 2 2 2 3 2 2 2 1 2 2 2 3 58